Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod07g0669 ATGATCCTTCAAACACTTTCTTCTTCGAATCGTTCTCAAGAAACAATTTTCATGACCCTATCCATGATTCCCTTTCCTTTGATATGGTTGACTTCTCCATGGATTCACAATCACAAGCACCAACGAACAACAATAGGGAACAACAACAAGGAGTCAAAGCAGAAGCCTCAGGATGAAGAAGAAGTGCAAAAACACACTAATGAGGTAAGGTACATAGGTGTTAGAAGAAGGCCTTGGGGAAAATTTGCAGCTGAGATTAGAGACACAACAAGGAATGGTGCAAGGGTTTGGCTTGGAACCTTTGATAGTGCTGAGGATGCTGCTTTGGCTTATGACCAAGCTGCATTTACCATGAGACGCTACAACGCTGTGCTCAACTTCCCAGTCAAAAGGGTCCAAGAATCTTTGCAAGAGATGGAGTATGGTTGCATCAAACTCAAAGGGTGTTCATCACCAGCACTTGCACTCAAGGAGAGGAACTACAAGAGAAGAAAATTGTCATCAAAGACTAACAGTAGTAATAAAGCCAGTGCCAGAAAGTGTAAAGGGAAGAACAGTGATCAATCATCATCATCAGAGAAGCCATGTGTGATGGTGCTAGAGGACTTGGGAGTTGAATATCTGGAGCACCTTCTAAGCATGTCGGATCAAAGTGCAAGCCCTAGCTTCTCCAAATAA 678 0.4292 MILQTLSSSNRSQETIFMTLSMIPFPLIWLTSPWIHNHKHQRTTIGNNNKESKQKPQDEEEVQKHTNEVRYIGVRRRPWGKFAAEIRDTTRNGARVWLGTFDSAEDAALAYDQAAFTMRRYNAVLNFPVKRVQESLQEMEYGCIKLKGCSSPALALKERNYKRRKLSSKTNSSNKASARKCKGKNSDQSSSSEKPCVMVLEDLGVEYLEHLLSMSDQSASPSFSK* 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod07g0669 225 MobiDBLite consensus disorder prediction 160 193 - -
Dod07g0669 225 Gene3D AP2/ERF domain 69 130 IPR036955 GO:0003700|GO:0006355
Dod07g0669 225 PRINTS Ethylene responsive element binding protein signature 71 82 IPR001471 GO:0003700|GO:0006355
Dod07g0669 225 PRINTS Ethylene responsive element binding protein signature 94 110 IPR001471 GO:0003700|GO:0006355
Dod07g0669 225 PANTHER DNA-BINDING DOMAIN 49 214 IPR044808 GO:0003700|GO:0009873
Dod07g0669 225 CDD AP2 70 129 IPR001471 GO:0003700|GO:0006355
Dod07g0669 225 PANTHER AP2 DOMAIN CONTAINING PROTEIN, EXPRESSED 49 214 - -
Dod07g0669 225 Pfam AP2 domain 70 120 IPR001471 GO:0003700|GO:0006355
Dod07g0669 225 SMART rav1_2 70 134 IPR001471 GO:0003700|GO:0006355
Dod07g0669 225 SUPERFAMILY DNA-binding domain 70 129 IPR016177 GO:0003677
Dod07g0669 225 MobiDBLite consensus disorder prediction 44 63 - -
Dod07g0669 225 ProSiteProfiles AP2/ERF domain profile. 70 128 IPR001471 GO:0003700|GO:0006355
Dod07g0669 225 MobiDBLite consensus disorder prediction 170 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod07g0669 Dod-Chr7 9165538 9166636 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod07g0669 62 220 AP2-EREBP Transcription Factor Family AT3G23240 52.201 1.49e-47 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dod07g0669 AP2 1.9e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod07g0669 K14516 - gmx:100782036 192.971
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod07g0669 07 9165538 9166636 Dod07g0669 07 9165538 9166636 ECH
Dod01g3546 01 76717381 76718525 Dod07g0669 07 9165538 9166636 PCT