Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod07g0617 ATGGAGGATTCAATGGGAAGCTATGACAGAGAGCTGAATCTCAAGGCCACAGAGTTAAGGTTGGGGCTGCCAGGAAGTGATGAGCCTGATGAGAGAATTTCATGCAGTTACTCTAATGTTAGAAGCAACAAAAGATCTTCACCAGATCAAGCTTCTGAGGAAGAGGAGCCCAAAAGCAAGAGAATCATGAATTCTAATGGCTCTGATGACAACACCACAAGTGATGACCAAGACAATATTGTTCCGCCTTCAAAGGCACAAGTAGTGGGGTGGCCACCAATTCGATCTTTTAGGAAGAACAGTCTACAACAGAAGAAGGGAGAACAGGTTGATGGGGGTGGGATGTACGTGAAAGTGAGCATGGCTGGTGCACCTTACTTGAGGAAAATAGATCTCAAGGTTTACAAGAGCTACCCTGAACTCCTTAAGGCCTTGGAAGTTATGTTCAAGTGCACTTTTGGTGAATATTCAGAAAGAGAAGGCTACAATGGATCTGAATATGCTCCAACTTATGAAGACAAGGATGGTGACTGGATGCTGGTCGGAGACGTTCCATGGCACATGTTCTTGTCGTCCTGCAAGATGCTAAGAATTGTGAAGGGTTCAGAAGCCAAGGGGTTGGGTTATTTATGA 633 0.4487 MEDSMGSYDRELNLKATELRLGLPGSDEPDERISCSYSNVRSNKRSSPDQASEEEEPKSKRIMNSNGSDDNTTSDDQDNIVPPSKAQVVGWPPIRSFRKNSLQQKKGEQVDGGGMYVKVSMAGAPYLRKIDLKVYKSYPELLKALEVMFKCTFGEYSEREGYNGSEYAPTYEDKDGDWMLVGDVPWHMFLSSCKMLRIVKGSEAKGLGYL* 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod07g0617 210 Pfam AUX/IAA family 17 208 IPR033389 -
Dod07g0617 210 MobiDBLite consensus disorder prediction 64 81 - -
Dod07g0617 210 PANTHER AUXIN-INDUCED PROTEIN 5 208 - -
Dod07g0617 210 MobiDBLite consensus disorder prediction 19 87 - -
Dod07g0617 210 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 5 208 IPR003311 GO:0005634|GO:0006355
Dod07g0617 210 MobiDBLite consensus disorder prediction 47 63 - -
Dod07g0617 210 Gene3D - 109 209 - -
Dod07g0617 210 ProSiteProfiles PB1 domain profile. 114 206 IPR000270 GO:0005515
Dod07g0617 210 SUPERFAMILY CAD & PB1 domains 111 198 - -
Dod07g0617 210 MobiDBLite consensus disorder prediction 32 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod07g0617 Dod-Chr7 8283822 8285713 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod07g0617 117 207 B3 DNA Binding Superfamily AT2G46530 39.560 1.95e-11 60.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Dod07g0617 AUX_IAA 8.1e-58 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod07g0617 K14484 - gmx:100780752 319.316
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g2479 01 63765734 63767171 Dod07g0617 07 8283822 8285713 PCT