Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod07g0539 ATGGGAACAATGGCTGCGCCACTAGGTAGTAAGCTTCAAAGCATGTTGCAGGCTGCGGTGCAATCTGTTCAGTGGACATATAGCCTGTTCTGGCAACTTTGTCCTCAACAAGTGATTTTGCAGTGGGGTGATGGGTACTACAATGGGGCAATTAAGACTAGGAAGACGGTGCAGCCAATGGAGGTTAGTGCTGAGGAGTCATCTCTCCAAAGAAGCCAGCAACTCAGGGAACTCTATGAATCATTATCCGCCGGAGAGACTAACCCTCCGATTCGCCGTCCTTGCGCCGCCTTGTCGCCAGAGGACCTAACGGAATCCGAATGGTTCTATTTGATGTGTGTCTCATTCTCCTTTCCTCCTGGTGTAGGGTTGCCGGGAAAGGCATATGCTAGGAGGCAGCATATATGGCTCACAGGTGCAAACGAGGTGGACAGCAAAACATTTTCGAGAGCTATTCTAGCCAAGAGTGCTCGTATCCAGACCGTGGTGTGCATTCCTCTATTGGACGGCGTCGTTGAGTTTGGCACAACGGAAAAGGTTCAAGAAGACCTTAACTTCATCCAACATGTGAAGACCTTTTTCATAGATCACCAACAACCTTCGCCACCAAAGCCTGCCCTGTCGGAACACTCCACTTCCAATCCCACCTCCTTATCCGGCCGCCTCACCTACACCACGGCAGATCCTCCACTACCTGCTAATCAAGGCGACAACATGGATGAAGACGAAGAGGAGGAAGAAGAAGAAGAAGAAGACGATGAAGACGACGAAGCCGAATCCGACTCTGGAGAGGAAACAGGCCGAAACAACCGCCTGAGCCCAACACCGGATGCTTTGGGCATCGCTGCTACGTTGGCAGAGCCAAGCGAATTAATGCAGTTAGAGATGTCGGAAGACATTCGTGTCGGGTCCCCCAATGACGGTTCAAATAACCTCGACTCGAATTTTCACTTGCTAGCGGTGAGCGAGCCAGATAATCCCTCGGCTCAGGCAGACTCTTATCGAAGGTGGGGCCCCACTGAAGACCCTTTGGGTTCCCTCCAAGTTCAACTACCGGCTTCAGTGCTTCCTCCATTAGAAGATCACTTGACACAGGAAGACACTCACTACTCTCAAACAGTATCAAGCATCCTCCAAAACCAGTCCACCCGTTGGGCTGAGTCCCCTTCCATTGCCTGCTACATCACCTGCTCCACCCAATCAGCATTCGCCAAGTGGACCGCCTGCGCAGCCGCAGACCACCACCACCACGCTGCCGACGGCTCCTCCCAGTGGCTCCTCAAATACATCCTCTTCACCGTGCCCTACTTCCACTCCAACAAGAGCCACCAAGAAGACAATAGCACCCCAAATAACACCAATGTCCCCGCAACCGGTCTAGCAGACCGGTTGCGCGGTGGCAAAGGAGGCGGTGGCGGCACCCCACAGGACGAGTTGAGTGCCAACCACGTCCTGGCAGAGCGCCGCCGCCGTGAGAAACTAAACGAGAGGTTCATCATCTTGAGATCCCTCGTTCCCTTTGTTACAAAAATGGACAAGGCTTCAATCTTAGGTGACACCATTGAATACGTGAAACAGCTTCGGAGGAAGATCCAGGACTTGGAAGCACGTAACCGTCCAAATGGAGTCTGA 1632 0.5263 MGTMAAPLGSKLQSMLQAAVQSVQWTYSLFWQLCPQQVILQWGDGYYNGAIKTRKTVQPMEVSAEESSLQRSQQLRELYESLSAGETNPPIRRPCAALSPEDLTESEWFYLMCVSFSFPPGVGLPGKAYARRQHIWLTGANEVDSKTFSRAILAKSARIQTVVCIPLLDGVVEFGTTEKVQEDLNFIQHVKTFFIDHQQPSPPKPALSEHSTSNPTSLSGRLTYTTADPPLPANQGDNMDEDEEEEEEEEEDDEDDEAESDSGEETGRNNRLSPTPDALGIAATLAEPSELMQLEMSEDIRVGSPNDGSNNLDSNFHLLAVSEPDNPSAQADSYRRWGPTEDPLGSLQVQLPASVLPPLEDHLTQEDTHYSQTVSSILQNQSTRWAESPSIACYITCSTQSAFAKWTACAAADHHHHAADGSSQWLLKYILFTVPYFHSNKSHQEDNSTPNNTNVPATGLADRLRGGKGGGGGTPQDELSANHVLAERRRREKLNERFIILRSLVPFVTKMDKASILGDTIEYVKQLRRKIQDLEARNRPNGV* 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod07g0539 543 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 12 194 IPR025610 -
Dod07g0539 543 PANTHER TRANSCRIPTION FACTOR TT8 11 536 - -
Dod07g0539 543 Coils Coil 517 537 - -
Dod07g0539 543 MobiDBLite consensus disorder prediction 237 262 - -
Dod07g0539 543 Gene3D - 479 541 IPR036638 GO:0046983
Dod07g0539 543 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 478 527 IPR011598 GO:0046983
Dod07g0539 543 PANTHER TRANSCRIPTION FACTOR TT8 11 536 - -
Dod07g0539 543 MobiDBLite consensus disorder prediction 197 276 - -
Dod07g0539 543 Coils Coil 239 261 - -
Dod07g0539 543 SMART finulus 484 533 IPR011598 GO:0046983
Dod07g0539 543 MobiDBLite consensus disorder prediction 441 482 - -
Dod07g0539 543 Pfam Helix-loop-helix DNA-binding domain 481 528 IPR011598 GO:0046983
Dod07g0539 543 MobiDBLite consensus disorder prediction 441 458 - -
Dod07g0539 543 MobiDBLite consensus disorder prediction 204 232 - -
Dod07g0539 543 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 480 538 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod07g0539 Dod-Chr7 7177504 7186464 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod07g0539 4 535 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G09820 44.112 1.91e-133 396
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dod07g0539 bHLH-MYC_N 2.5e-53 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod07g0539 - - adu:107475781 741.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod07g0539 07 7177504 7186464 Dod07g0539 07 7177504 7186464 ECH
Dod01g2409 01 62852690 62862499 Dod07g0539 07 7177504 7186464 PCT
Dod01g2886 01 69328012 69330644 Dod07g0539 07 7177504 7186464 PCT