Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod07g0471 ATGTCGTTTAGGAGCATTATCCTTGATAGGAAGGGTTTGAGATCCAGGTCACAGTCACACCGTGATGGTGATGGTGTTGGTGGTTTGGTGGTGATTGATGGGTTGAAGCAGAGTTGTTGGGCTAACATGCCACCTGAGCTCTTGCGGGATGTGCTCATGCGGATTGAGGCCTCTGAAGATGCCTGGCCTGACAGGAAACATGTCGTTGCCTGCGCGGGCGTCTGCCGCAGCTGGAGGGAGATCATGAAGGAGATTGTCAAGTCCCCTCAAGTTTCCAGCAAGCTAACATTCCCAATATCCTTGAAGCAGCCTGGTCCAAGGGACTCTCTTCTTCAGTGCTATATCAAACGGAATCGCAGTAATCAAACATATTATCTGTTCCTTGGTTTGAACCAAGCCTCAACTGACGATGGCAAATTCCTTCTTGCTGCACGCAAGTGTCGGCGTGCAACCCACACTGACTATATCATCTCTCTAAACTACGATGATGTATCAAGAGGGAGTAGCACCTATATTGGGAAGTTGAGATCAAACTTTCTGGGCACCAAATTCACCGTATATGATGCACACCCGCCAATTTGTGGAGCGAAAGTTACAAAGTCTCGTTCCACTAGGCTAGTTAGTCTCAAGCAAGTGTCTCCAAGAGTTCCCGCTGGCAACTATCCCATTGTGCATGTCTCGTATGATCTGAATGTTTTGGGCTCCAGGGGCCCTAGGATTATGCAATGTGTTATGGATGCCATCCCTGCCTCAGCTGTTGAACCAGGAGGTGTAGCCCCAACACAGACTCAATTTCTCCATAGCAGAATTGAAACTTCTCCATCTATCCCATTTTTTAGATCAAAATCAACACGCATGGAGAATCTCCCATCAGGGCCTTTGACTTGTCAGAATGAGGGAATGCTGGTTCTACGGAACAAGTCTCCTAGGTGGCATGAACAACTCCAGTGCTGGTGTCTGAACTTCAATGGACGAGTGACAGTTGCTTCAGTTAAAAATTTCCAGCTGGTTGCTTCTCCAAAAAATGGAGTTTCTGAGCAGGCTCAGGAAAATGTTATCCTGCAGTTTGGAAAAGTTGGAAAGGATGTATTCACCATGGATTACCAGTATCCAATCTCTGCCTTTGAAGCATTTGCAATATGCCTTAGCAGTTTTGACACCAAGATTGCTTGTGAATGA 1179 0.4673 MSFRSIILDRKGLRSRSQSHRDGDGVGGLVVIDGLKQSCWANMPPELLRDVLMRIEASEDAWPDRKHVVACAGVCRSWREIMKEIVKSPQVSSKLTFPISLKQPGPRDSLLQCYIKRNRSNQTYYLFLGLNQASTDDGKFLLAARKCRRATHTDYIISLNYDDVSRGSSTYIGKLRSNFLGTKFTVYDAHPPICGAKVTKSRSTRLVSLKQVSPRVPAGNYPIVHVSYDLNVLGSRGPRIMQCVMDAIPASAVEPGGVAPTQTQFLHSRIETSPSIPFFRSKSTRMENLPSGPLTCQNEGMLVLRNKSPRWHEQLQCWCLNFNGRVTVASVKNFQLVASPKNGVSEQAQENVILQFGKVGKDVFTMDYQYPISAFEAFAICLSSFDTKIACE* 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod07g0471 392 ProSitePatterns Tub family signature 2. 377 392 IPR018066 -
Dod07g0471 392 PANTHER TUBBY-RELATED 1 391 - -
Dod07g0471 392 SUPERFAMILY F-box domain 35 83 IPR036047 GO:0005515
Dod07g0471 392 Gene3D Tubby Protein; Chain A 97 392 IPR025659 -
Dod07g0471 392 PRINTS Tubby superfamily signature 155 171 IPR000007 -
Dod07g0471 392 PRINTS Tubby superfamily signature 304 321 IPR000007 -
Dod07g0471 392 PRINTS Tubby superfamily signature 171 195 IPR000007 -
Dod07g0471 392 PRINTS Tubby superfamily signature 220 247 IPR000007 -
Dod07g0471 392 PRINTS Tubby superfamily signature 349 368 IPR000007 -
Dod07g0471 392 PRINTS Tubby superfamily signature 370 392 IPR000007 -
Dod07g0471 392 PRINTS Tubby superfamily signature 322 338 IPR000007 -
Dod07g0471 392 SUPERFAMILY Tubby C-terminal domain-like 89 392 IPR025659 -
Dod07g0471 392 Pfam F-box domain 40 86 IPR001810 GO:0005515
Dod07g0471 392 PANTHER TUBBY-LIKE F-BOX PROTEIN 3-RELATED 1 391 - -
Dod07g0471 392 Pfam Tub family 101 387 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod07g0471 Dod-Chr7 6261907 6266285 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod07g0471 1 392 TUB Transcription Factor Family AT2G47900 73.236 0.0 590
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Dod07g0471 Tub 4.9e-109 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod07g0471 K19600 - gmx:100809257 733.791
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod07g0471 07 6261907 6266285 Dod07g0471 07 6261907 6266285 ECH