Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod07g0453 ATGGGTGATAACATAGGCAAAGCCTTATCAGACAGAGAACCCTTCAATTACAACTTCACAGCTTCAACCTCCTCTTCTTCTTCTCATCAAGCTGAGGGGTTCATCAAAGAGCAAGATCGATTGCTTCCAATAGCAAATGTTGGGCGAATCATGAAGCAAATCCTTCCCCCAAACGGAAAGATCTCAAAGGAAGCAAAAGAGACCATGCAGGAGTGCGTGTCCGAGTTCATAAGCTTTGTCACTGGTGAAGCCTCCGACAAGTGTCACAAGGAGAAGCGCAAGACAGTGAATGGTGATGATATTTGCTGGGCCTTGTCTACCTTAGGGTTTGATGACTACGCTGAGCCACTCAAGAGGTACTTGCATAAGTATAGGGAATTGGAAGGTGAGAAACCTAATAATCATCATAACAAGCAAGCTAATAGCACTAATAGTAACAACAACAATATTGATGATCTTGTTGTTGGGAACAATATTGAAACATATAATTATGGAGGTGGTGGTCATGAGTCATCACCAACAACAAGAAGAGCAACCACTAGTAGTGTGAGTGATAGGAGCAGTGGCCAGAGATTTTCAAATTTCTAG 588 0.4252 MGDNIGKALSDREPFNYNFTASTSSSSSHQAEGFIKEQDRLLPIANVGRIMKQILPPNGKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALSTLGFDDYAEPLKRYLHKYRELEGEKPNNHHNKQANSTNSNNNNIDDLVVGNNIETYNYGGGGHESSPTTRRATTSSVSDRSSGQRFSNF* 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod07g0453 195 ProSitePatterns NF-YB/HAP3 subunit signature. 72 88 IPR003956 GO:0005634|GO:0006355|GO:0043565
Dod07g0453 195 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 19 150 IPR027113 GO:0001228|GO:0006355|GO:0016602
Dod07g0453 195 MobiDBLite consensus disorder prediction 129 195 - -
Dod07g0453 195 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 41 105 IPR003958 -
Dod07g0453 195 MobiDBLite consensus disorder prediction 164 195 - -
Dod07g0453 195 MobiDBLite consensus disorder prediction 136 156 - -
Dod07g0453 195 PRINTS CCAAT-binding transcription factor subunit A signature 88 106 - -
Dod07g0453 195 PRINTS CCAAT-binding transcription factor subunit A signature 69 87 - -
Dod07g0453 195 PRINTS CCAAT-binding transcription factor subunit A signature 107 125 - -
Dod07g0453 195 Gene3D Histone, subunit A 28 152 IPR009072 GO:0046982
Dod07g0453 195 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-5 19 150 - -
Dod07g0453 195 SUPERFAMILY Histone-fold 38 151 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod07g0453 Dod-Chr7 6010895 6011712 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod07g0453 16 135 CCAAT-HAP3 Transcription Factor Family AT2G47810 71.642 1.95e-66 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Dod07g0453 CBFD_NFYB_HMF 1.3e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod07g0453 K08065 - gmx:100796514 207.994
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod07g0453 07 6010895 6011712 Dod07g0453 07 6010895 6011712 ECH