LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dod07g0387	ATGCAATCCTCGCTGCCTAACCGGTCTGCATATGTTCCGCCGCATCTTCGCAACCGGCAATTGGCCTCTGAACCCTCTGCTGCACCTTCAATGCCGGCCAATGACCGGCCGAATTATGGCGGCCCAATTGCTGCTTCCATTGGGGGGAGCTCCTTTAATAAGCCTGATCTCCGGCGGCAGGGGTATGGCTCTAGCTTTCAGAGTGGTGGTGGTGGTGGTGGTAGTGGTGTATGGAGCAATAATAGAGGAGGAGGAGGGAGGGACCGTGGAAGGCGTGAGGTGAACCCTTTTGAGAATGATGAGGCTGCGGATCAATCGGTTGGCGAGCAGGAAAACACAGGGATTAACTTTGATGCTTATGATGATATCCCTAATATAAAGCGGTGCAAGTATGTCAAGCCAACTCCGGTTCAGAGGTATGCCATACCGATATCTCTTTCCGGACGAGACTTGATGGCTTGTGCTCAGACAGGTTCAGGAAAGACTGCTGCATTTTGCTTCCCTGTCATAAGTGGAATCATGAGGGAGCAGTATGTTAAAAGACCATATGTGGCGAAAACTGCTTTCCCTTTGGCGCTTATCCTCTCCCCTACTCGGGAGCTTTCGTGTCAGATACATGATGAGGCCAGGAAATTTTCTTACCAAACTGGTGTCAAGGTGGTAGTTGCTTATGGAGGAGCACCAATCAACCAGCAGTTGCGGGAGCTTGAGAGAGGAGTTGATATCCTGGTTGCAACTCCAGGACGATTGGTAGATTTGCTTGAGAGGGCTAGGGTATCACTGCAGATGATAAGATATCTGGCTCTTGATGAGGCAGATCGCATGCTGGATATGGGTTTTGAGCCTCAAATAAGAAGGATAGTTGAACAAATGGACATGCCTCCTGCTGGCATGAGACAGACATTGCTGTTTAGTGCCACGTTTCCAAAAGAGATACAGAGACTTGCATCAGATTTTCTTTCAAATTATGTGTTCCTAGCTGTTGGAAGGGTTGGTTCAAGTACTGATCTAATTGCTCAAAGAGTAGAATATGTGCTTGAGTCAGATAAGAGAAGCCACCTCATGGACCTTCTTCATGCTCAGAGGGAAAATGGAATTGATGGCAAGCAAGGTCTGACATTAGTTTTTGTGGAAACAAAGAAAGGAGCTGACGCATTGGAACACTGTTTGTGTGTCAATGGGTTTCCTGCAGCTAGCATTCATGGTGACAGAACACAACAAGAAAGAGAACTGGCATTGAGGTCATTCAAGAGCGGAAACACACCAATTTTAGTGGCTACAGATGTTGCCGCTCGTGGTCTTGATATTCCACGGGTGGCACATGTGGTAAATTTTGATCTTCCCAATGACATTGATGATTATGTGCACCGGATAGGAAGAACTGGGAGAGCTGGGGGATCCCGTTTTGGTGGCCGCGATTTTAGGAAGGAGGGCTCATTCAATAAAGGAACAGATTACTATGGCGGAACAGGTGGATATGGGGTTCCTGGAAGTTATGGTGGAGGATATGGTCAAGGTGTGACAAGTGCTTGGGATTAG	1539	0.4782	MQSSLPNRSAYVPPHLRNRQLASEPSAAPSMPANDRPNYGGPIAASIGGSSFNKPDLRRQGYGSSFQSGGGGGGSGVWSNNRGGGGRDRGRREVNPFENDEAADQSVGEQENTGINFDAYDDIPNIKRCKYVKPTPVQRYAIPISLSGRDLMACAQTGSGKTAAFCFPVISGIMREQYVKRPYVAKTAFPLALILSPTRELSCQIHDEARKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRRIVEQMDMPPAGMRQTLLFSATFPKEIQRLASDFLSNYVFLAVGRVGSSTDLIAQRVEYVLESDKRSHLMDLLHAQRENGIDGKQGLTLVFVETKKGADALEHCLCVNGFPAASIHGDRTQQERELALRSFKSGNTPILVATDVAARGLDIPRVAHVVNFDLPNDIDDYVHRIGRTGRAGGSRFGGRDFRKEGSFNKGTDYYGGTGGYGVPGSYGGGYGQGVTSAWD*	513

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dod07g0387	512	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	142	326	IPR014001	-
	Dod07g0387	512	PANTHER	ATP-DEPENDENT RNA HELICASE DBP3	125	469	-	-
	Dod07g0387	512	PANTHER	ATP-DEPENDENT RNA HELICASE DBP3	21	124	-	-
	Dod07g0387	512	MobiDBLite	consensus disorder prediction	1	94	-	-
	Dod07g0387	512	SMART	ultradead3	130	341	IPR014001	-
	Dod07g0387	512	Pfam	DEAD/DEAH box helicase	135	315	IPR011545	GO:0003676\|GO:0005524
	Dod07g0387	512	Gene3D	-	328	472	IPR027417	-
	Dod07g0387	512	CDD	SF2_C_DEAD	338	465	-	-
	Dod07g0387	512	Pfam	Helicase conserved C-terminal domain	350	465	IPR001650	-
	Dod07g0387	512	PANTHER	DEAD-BOX ATP-DEPENDENT RNA HELICASE 52B-RELATED	125	469	-	-
	Dod07g0387	512	PANTHER	DEAD-BOX ATP-DEPENDENT RNA HELICASE 52B-RELATED	21	124	-	-
	Dod07g0387	512	SMART	helicmild6	384	465	IPR001650	-
	Dod07g0387	512	MobiDBLite	consensus disorder prediction	57	75	-	-
	Dod07g0387	512	Gene3D	-	91	327	IPR027417	-
	Dod07g0387	512	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	353	503	IPR001650	-
	Dod07g0387	512	CDD	DEADc_DDX3_DDX4	125	332	IPR044763	GO:0003724\|GO:0005524
	Dod07g0387	512	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	191	466	IPR027417	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dod07g0387	Dod-Chr7	5160794	5165282	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dod07g0387	131	465	Eukaryotic Initiation Factors Gene Family	AT3G19760	34.513	6.75e-55	188

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Dod07g0387	K11594		-	gmx:100818326	753.821