Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod07g0362 ATGGGGTTACGTGTCGCTATAAATCTTAAGAAGCGAACATTAGGGTTGCTGTTGTTTCAGCTTCACACCCTTCAAGTAGAGCCACCAGCACCAGCAGCAGCCTCCAGCGCCTCTTCGAATCTCAGGATGGACTCTGGAATAAAGCACGCAATTGTTGTCAAAGTTATGGGTCGCACTGGATCTAGAGGACAAGTGACCCAGGTTAGAGTCAAGTTTCTGGATGATCAGAACCGACACATCATGAGGAATGTGAAAGGACCAGTGAGAGAAGGAGACATCCTCACCTTACTCGAGTCTGAAAGAGAAGCAAGAAGGCTGCGTTAG 324 0.4815 MGLRVAINLKKRTLGLLLFQLHTLQVEPPAPAAASSASSNLRMDSGIKHAIVVKVMGRTGSRGQVTQVRVKFLDDQNRHIMRNVKGPVREGDILTLLESEREARRLR* 108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod07g0362 107 ProSitePatterns Ribosomal protein S28e signature. 98 106 IPR028626 -
Dod07g0362 107 PANTHER 40S RIBOSOMAL PROTEIN S28 43 107 - -
Dod07g0362 107 Hamap 30S ribosomal protein S28e [rps28e]. 43 107 IPR000289 GO:0003735|GO:0005840|GO:0006412
Dod07g0362 107 Pfam Ribosomal protein S28e 47 106 IPR000289 GO:0003735|GO:0005840|GO:0006412
Dod07g0362 107 Gene3D - 40 107 IPR012340 -
Dod07g0362 107 SUPERFAMILY Nucleic acid-binding proteins 44 107 IPR012340 -
Dod07g0362 107 PANTHER 40S RIBOSOMAL PROTEIN S28 43 107 IPR000289 GO:0003735|GO:0005840|GO:0006412
Dod07g0362 107 CDD S1_S28E 48 107 IPR000289 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod07g0362 Dod-Chr7 4868333 4870505 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod07g0362 43 107 Cytoplasmic Ribosomal Protein Gene Family AT5G03850 89.231 1.48e-35 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod07g0362 K02979 - egr:104443388 105.145