Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod07g0343 ATGTTGCTGGTTCCAGAGATGGAAGGTAAGACTGAAAGTCATACGACATCGGCAGCAGCCTTTGTGAAAGTGGGGATTCAAGAAGCATGCCATGATGCTTGCAGTATATGCCTTGAGGATTTTAGTGAAAGTGATCCTGCAACGGTCACCACTTGCAAGCATGAGTTCCACCTGCAGTGCATTCTTGAATGGTGTCAGAGAAGCTCCCAATGTCCCATGTGTTGGCAATCTATTAGCTTGAAGGATGCTACCAGTCAAGAACTGCTTGAGGCAGTAGAGCAGGAGAGAAGCTTGAAAGCTGCCCCATCAAGAAATGCTGCTGTTTTTCATCATCCTGCCGTTGGTGATTTTGAATTGCAGCATTTACCAGTGGGTGTGAATGATGCCGATTTTGAAGAGCGAATAATTCAGCATTTAGCTGCTGCAGCAGCGATGAGAAGAGCACGCCACCTTGGTCAGAGGGAAGGTCATAGCACTAGGTCATCTGCTCATGGCCACCAGCAGTTCTTGCTATTATCAACTCAGCCAAGTGCACATCCATCAGGTCCGGATTCAGTTGTGGGAGAAGGAAATGAACCAGCTGCAATTCCTGTAGGAAGTCCATCTACTCCACTCGCATCTGATGGAGATGAACCATTGCCATGGCAGCGGATCCCACATTTTCAACCTCAGAGCTTGTCTTCATTGGCTCCTGGTTCCACTGTCTTGGCAACAAACCGACAAGGGATTTACTCTAATGATAGAGGTACTACCACTCATTCTTCGACTGAAAACCAAGATAGAGCAGGGCCATCAGAATTCCAGTCATTTTCTGATTCTTTGCGGTGCAAATTTAATGCAATGTCCCTGAGATACAAAGAGTCGCTTTCAAAGGGCACGAGGGGGTGGAAAGAGAGGCTGTTCTCTCGAAACTCTTCCATGTCAGAACTTGGTTCAGAAGTGAAGAGAGAGTTTAATGCTGGAATTGCCAGTGTATCCCGATTGATGGAGCGCCTTGAAAATAGAGAAAATAATAGGGCCAGGGGTGCTTCTTTGTCAAATCATTTGGCGGATTCTTCCATCGCAGAGACGAGTAACCAGTACAATGTGGAACCTCTTGGAAGGAGCTCTTTGCACCACAGTAATACTCCATCTACTTATTCTGCTAGCTCAGATTCAAATTGA 1164 0.4639 MLLVPEMEGKTESHTTSAAAFVKVGIQEACHDACSICLEDFSESDPATVTTCKHEFHLQCILEWCQRSSQCPMCWQSISLKDATSQELLEAVEQERSLKAAPSRNAAVFHHPAVGDFELQHLPVGVNDADFEERIIQHLAAAAAMRRARHLGQREGHSTRSSAHGHQQFLLLSTQPSAHPSGPDSVVGEGNEPAAIPVGSPSTPLASDGDEPLPWQRIPHFQPQSLSSLAPGSTVLATNRQGIYSNDRGTTTHSSTENQDRAGPSEFQSFSDSLRCKFNAMSLRYKESLSKGTRGWKERLFSRNSSMSELGSEVKREFNAGIASVSRLMERLENRENNRARGASLSNHLADSSIAETSNQYNVEPLGRSSLHHSNTPSTYSASSDSN* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod07g0343 387 MobiDBLite consensus disorder prediction 174 218 - -
Dod07g0343 387 Pfam Ring finger domain 33 74 IPR001841 -
Dod07g0343 387 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHF2A 8 386 - -
Dod07g0343 387 MobiDBLite consensus disorder prediction 147 166 - -
Dod07g0343 387 MobiDBLite consensus disorder prediction 339 387 - -
Dod07g0343 387 ProSiteProfiles Zinc finger RING-type profile. 34 74 IPR001841 -
Dod07g0343 387 SUPERFAMILY RING/U-box 26 81 - -
Dod07g0343 387 SMART ring_2 34 74 IPR001841 -
Dod07g0343 387 MobiDBLite consensus disorder prediction 242 268 - -
Dod07g0343 387 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 8 386 - -
Dod07g0343 387 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 84 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod07g0343 Dod-Chr7 4159530 4163894 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod07g0343 22 82 C3H Transcription Factor Family AT4G00335 42.623 4.38e-13 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod07g0343 K19043 - gmx:100803582 539.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod07g0343 07 4159530 4163894 Dod07g0343 07 4159530 4163894 ECH
Dod01g2985 01 70485521 70489775 Dod07g0343 07 4159530 4163894 PCT