Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod07g0335 ATGGGTCGAGCAAAAGTAACTTTGAAATGCATCCAAAATGAGAAAGCTCGTGCACAGATTTTCAAAGGAAGAATGAAGGGACTTAACAAGAAAATGACTGAATTTTCCGAAAAGTGTAAGGTTGAGGCTTGTTTGATTGTCTATGAATGCAACGGTACTCAACCAATAACTTGGCCCCATGACCAAGAAGAAGTTTGCTCAATCCTTGAAAAGTATGAGGCTCAAAAGAAAGAGAGATCTCCTAAGAGCTTTGATTTTGAAGACTTTTTTGAGAATAGGAAAAACATGGTTCAAGCTGAGATTTGTAAAATAAGGAAAGAAATCGTGCAGATAAAATACCCCACTTGGAATTCAGTTTTCAAAAGCTTAGATGAAGAGCATCGGATGAAGTTCATCACTATGTTGGACACTAAGATTATAGCTTGTAACCAACGAATTGACATGTTGAAAAATAATCCACAACAAACTCAAACCAACTTCAGTTTTGGGCAGAACATGGCTGCCTTAGTCCCAAGCCCAAGCCCAAGCCCAAGCTCACTCAATCCCATGCAAAATACCTCTCAAATCCAACTTATCCCTACTCCTGTGCTGCCACTTAATCACAATAACCAATTACCTTGTGTAGTTGATCATGGTAGGAGCTATCAATCCCAAATGTCTCACTTTGATCCAAATTTTATGCAGTTGGCAGGAGATAATAATGGGATGGTGGGTCCCACTAATCAAGTTGTTAGGCATTTGGGTTCTACTAAACAAAATAATGGTGCTATTGTAGATCCTACAGATCAATTTGGTGAGTTTATGGATTTGCCTAAGTTTTGTGAGTATGAGAATTGGACAAGTCAACCAACTAAGCCTGTGGATTGGGCAAGTCAACTTCATGATCCTAATTTGCAGGCTACTCCTTCTCAATTTCAGACTGGGCCGCAACCTCTGGGTACCTTGCCACCAACAATGGATGAAGTTTTGATTTATGACTACAACAACATGTTCGAGGTTCCATCATTCGACAACATGTACAAGAAGTAG 1029 0.3955 MGRAKVTLKCIQNEKARAQIFKGRMKGLNKKMTEFSEKCKVEACLIVYECNGTQPITWPHDQEEVCSILEKYEAQKKERSPKSFDFEDFFENRKNMVQAEICKIRKEIVQIKYPTWNSVFKSLDEEHRMKFITMLDTKIIACNQRIDMLKNNPQQTQTNFSFGQNMAALVPSPSPSPSSLNPMQNTSQIQLIPTPVLPLNHNNQLPCVVDHGRSYQSQMSHFDPNFMQLAGDNNGMVGPTNQVVRHLGSTKQNNGAIVDPTDQFGEFMDLPKFCEYENWTSQPTKPVDWASQLHDPNLQATPSQFQTGPQPLGTLPPTMDEVLIYDYNNMFEVPSFDNMYKK* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod07g0335 342 PANTHER MADS BOX PROTEIN 3 259 - -
Dod07g0335 342 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 52 IPR002100 GO:0003677|GO:0046983
Dod07g0335 342 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
Dod07g0335 342 ProSiteProfiles MADS-box domain profile. 1 52 IPR002100 GO:0003677|GO:0046983
Dod07g0335 342 PANTHER PROTEIN, PUTATIVE-RELATED 3 259 - -
Dod07g0335 342 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
Dod07g0335 342 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod07g0335 Dod-Chr7 4095465 4096493 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod07g0335 1 125 Type I MADS-box Gene Family AT5G55690 33.588 7.15e-14 69.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Dod07g0335 SRF-TF 1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod07g0335 - - aprc:113852359 233.802