Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod07g0312 ATGGATGAAATTGAAGTCCCTCACTATTTCATCTGCCCAATATCACTCCAAATCATGAAGGATCCTGTGACTGCAATAACAGGAATCACATATGACCGAGACAGCATTGAGCAATGGCTATTCACAAACAAGAACACCACATGTCCAGTTACCAAACAGCCCTTACCAAGGGGCTCTGATTTGACCCCTAACCACACCCTTCGCCGCTTGATCCAAGCATGGTGCACCCAAAATGCATCTTTAGGCATTGATAGGATCCCAACACCAAAGCCACCCCTTAACAAGGTTCAAGTCCTAAAGCTCCTTAAGGACCTCAAGGACCCGAAGTTGCAGCTCAAGAGTCTAAGGCAATTGGAGCTTCTTGCAGCTGAGAATGAGAGGAACAAGAAGTGTTTGATTGAAGCTGGTGTCCCAAGAGCCATGATCATGTTCATAGTGGCTTGTTATAGAAAAGGCCTAATTGATGAGGGTCTTGAAGAGGCCTTGAGTTTACTACAACTTGCTAAGGTACCTGCTGAGGAAGTGAAGGTGCTTATGGCTGAAAATGACCAGGTATTGGATTCTCTAACATGGGTTTTAGGGTGTGAGATAATAGAAAATTCTGTTGCTGTGAAATCACATGCTGTTCTAGTGATCAAAACACTGATCCAAAAGGGTGACCACAGTGTCCTTGAGATGCTAAAACCTGAGTTCTTTGAGAGAATTGTGAAGGTTTTGAGACATGGGGTGATAACACAACAAGGGACTAGTGCTGCTCTGCAGGTGCTGTTGGGTGCTTGTCCTTGGGGGAGGAACAGGATCATGATGGTGGAAGCTGGTGCAGTTTTTGAGCTGATTGAGATTGAGATGGGGGCACCTGAGAAGAGAACCACTGAGTTAACAATGGCCATACTGTTTCATCTATGTTCCTGTGCAAGTGGAAGGGCTGACTTTTTGAGACACAAAGGTTCAATTGCAGTTTTGACAGAGAGAGTGTTGAAGGTTTCTGCAGCAGTTGATGATAGGGCCATGTTTGTTCTCTCATTGATATGTAAGTTCTCTGCCACACAACTGGTGCTGCAAGAGATGCTGAAGGTTGGAACTGTGGCTAAGCTTTGCATGTTGCTTCAAACTGATCATGCCAAATATATCAAGGACAAAGCAATGGACATTCTTAAGTCTCACTCCGAGGTTTGGAAGAACTCTCCTTGTTTTCCTGATCGGTCTTCTTCTTATGCAAGTTTGCATAAGTAG 1233 0.4453 MDEIEVPHYFICPISLQIMKDPVTAITGITYDRDSIEQWLFTNKNTTCPVTKQPLPRGSDLTPNHTLRRLIQAWCTQNASLGIDRIPTPKPPLNKVQVLKLLKDLKDPKLQLKSLRQLELLAAENERNKKCLIEAGVPRAMIMFIVACYRKGLIDEGLEEALSLLQLAKVPAEEVKVLMAENDQVLDSLTWVLGCEIIENSVAVKSHAVLVIKTLIQKGDHSVLEMLKPEFFERIVKVLRHGVITQQGTSAALQVLLGACPWGRNRIMMVEAGAVFELIEIEMGAPEKRTTELTMAILFHLCSCASGRADFLRHKGSIAVLTERVLKVSAAVDDRAMFVLSLICKFSATQLVLQEMLKVGTVAKLCMLLQTDHAKYIKDKAMDILKSHSEVWKNSPCFPDRSSSYASLHK* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod07g0312 410 PANTHER WDSAM1 PROTEIN 3 401 IPR045185 GO:0061630
Dod07g0312 410 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB24 3 401 - -
Dod07g0312 410 ProSiteProfiles U-box domain profile. 5 81 IPR003613 GO:0004842|GO:0016567
Dod07g0312 410 SMART Ubox_2 9 74 IPR003613 GO:0004842|GO:0016567
Dod07g0312 410 Pfam U-box domain 6 78 IPR003613 GO:0004842|GO:0016567
Dod07g0312 410 Gene3D - 95 395 IPR011989 -
Dod07g0312 410 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 82 IPR013083 -
Dod07g0312 410 SUPERFAMILY RING/U-box 3 83 - -
Dod07g0312 410 SUPERFAMILY ARM repeat 98 375 IPR016024 -
Dod07g0312 410 Coils Coil 115 135 - -
Dod07g0312 410 CDD RING-Ubox_PUB 10 53 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod07g0312 Dod-Chr7 3845826 3847288 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod07g0312 2 398 U-box Gene Family AT3G11840 41.986 1.34e-116 346
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod07g0312 - - lja:Lj0g3v0014579.1 570.081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod07g0312 07 3845826 3847288 Dod07g0312 07 3845826 3847288 ECH
Dod07g0312 07 3845826 3847288 Dod01g2963 01 70254165 70255730 PCT