Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod07g0285 ATGTCCGGCGGTGCTGGAGCTCCCAACCGCCGCGCATCGCCGCCGCAACCGTCGCAGCGGGAGGATTCCGGCGCCCCGAACCGGCCGCCGCTCAAGCGCCACCTCGCATTCGCATCGTCGAAACCGCCGTTCGCTCCGCCGGACGAGTACCACAGCTTCTCCGCTGTCGCTCCCGACTCCGCCGGCGGGAGAGTCGCCGCCGATCAGGAGCCTGAAGCCGTTGTTGTTAGATCTCCGTATGTGAAGCGGAAGGGCGGGATGAATAACAGCGAAGGAGACTCACAAAAGTTTATTAACTTACCTGGATATACTAATGTACTGAATAGTCCCTTCAAAACTCCTATGTCGTCAAAAGTGGGGAGAACACATAAGTCAAAGGTTTCCAAAGAAGGAATGTCATGTCCTCAGACACCCATTTCTAATGCCGGTTCCCCTTCTCCTCTTACTCCTGCTGGTAGCTGTCGATATGACAGTTCATTAGGTCTCTTGACAAGAAAATTCGTCAATTTAGTCAAGCATTCAGAGGATGGTATTCTTGACCTAAATAAAGCAGCTGAAACATTGGAGGTGCAAAAGAGGAGGATATATGACATAACTAACGTTTTGGAAGGCATTGGCCTCATTGAAAAAAAGCTCAAGAACAGAATACATTGGAAGGGAATTGAATCTTCTACATCTGGTGAGGCAGATGGCGATGTCTCCATGCTTAAGGAAGAAGTTGAGAAACTCTCTTTGGAAGAGCACAGATTGGATGACCAAATAAGGGAAATGCAAGAAAGGCTGAGGTGTTTGAGTGAGGACGAAAACAACCAGAAGTTCCTTTTTGTGACTGAAGAAGATATCAAGGGCCTACCTTGCTTCCAGAATGAAACTCTGATAGCAATTAAAGCTCCACATGGAACCACCCTGGAAGTCCCAGATCCTGAGGAAGCTGTTGACTATCCACAAAGAAGATATAGAATCATTCTTAGAAGCACTATGGGACCCATTGATGTCTACCTTATCAGTCAATTCGAAGAGAAGTTTGAAGAGATAAATGGTGGTGAGCCCCCCATGAGTTTCCAACTTGCTTCGAGTTCAGGGTCCAACGAGCAACTAGTGACAGAAACGGTTCTTGCAGAATGCAGTGGAAAAGGAATTGAATCTCAAGCTCAGATCTCCTCTCATGAACACACTGATCTAAACACTTCACAAGAGTTTGCTGGGGGCATGATGAAGATTGTCCCTTCAGATGCTGATAATGACGCAGATTATTGGCTTCTATCAGATGCTGAAGTCAGCATAACAGATATGTGGAGAACAGACTCTAGCGTTGATTGGAATGGTGTGGACATGCTTCCTCCTGACTTAGGAATTATCCCAAGGCTGCAGACTCCATCTGGGTTTGCTGAAACTCCATCCACTGTAGCTAATCCGAGTCAGAGATGA 1428 0.4741 MSGGAGAPNRRASPPQPSQREDSGAPNRPPLKRHLAFASSKPPFAPPDEYHSFSAVAPDSAGGRVAADQEPEAVVVRSPYVKRKGGMNNSEGDSQKFINLPGYTNVLNSPFKTPMSSKVGRTHKSKVSKEGMSCPQTPISNAGSPSPLTPAGSCRYDSSLGLLTRKFVNLVKHSEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIHWKGIESSTSGEADGDVSMLKEEVEKLSLEEHRLDDQIREMQERLRCLSEDENNQKFLFVTEEDIKGLPCFQNETLIAIKAPHGTTLEVPDPEEAVDYPQRRYRIILRSTMGPIDVYLISQFEEKFEEINGGEPPMSFQLASSSGSNEQLVTETVLAECSGKGIESQAQISSHEHTDLNTSQEFAGGMMKIVPSDADNDADYWLLSDAEVSITDMWRTDSSVDWNGVDMLPPDLGIIPRLQTPSGFAETPSTVANPSQR* 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod07g0285 475 Pfam E2F transcription factor CC-MB domain 236 336 IPR032198 GO:0046983
Dod07g0285 475 PANTHER TRANSCRIPTION FACTOR E2F 29 452 IPR015633 GO:0000978|GO:0006357
Dod07g0285 475 PANTHER TRANSCRIPTION FACTOR E2FB 29 452 - -
Dod07g0285 475 Gene3D - 228 337 - -
Dod07g0285 475 Pfam E2F/DP family winged-helix DNA-binding domain 157 220 IPR003316 GO:0005667|GO:0006355
Dod07g0285 475 MobiDBLite consensus disorder prediction 1 70 - -
Dod07g0285 475 SUPERFAMILY E2F-DP heterodimerization region 233 337 IPR037241 -
Dod07g0285 475 Coils Coil 233 267 - -
Dod07g0285 475 SUPERFAMILY "Winged helix" DNA-binding domain 155 218 IPR036390 -
Dod07g0285 475 CDD E2F_DD 236 337 IPR032198 GO:0046983
Dod07g0285 475 MobiDBLite consensus disorder prediction 125 150 - -
Dod07g0285 475 Gene3D - 149 222 IPR036388 -
Dod07g0285 475 SMART E2F_TDP_2 155 220 IPR003316 GO:0005667|GO:0006355
Dod07g0285 475 MobiDBLite consensus disorder prediction 129 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod07g0285 Dod-Chr7 3537054 3542009 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod07g0285 23 475 E2F-DP Transcription Factor Family AT2G36010 55.391 1.41e-167 479
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Dod07g0285 E2F_CC-MB 1.6e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod07g0285 K06620 - gmx:100811762 709.138
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod07g0285 07 3537054 3542009 Dod07g0285 07 3537054 3542009 ECH