Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod07g0272 ATGTCCACAAACCACTACTCCTTGGACCTTCCAGAAACAACACTCTGGTGGACTCAGCATCAACCACATCCACAACAACAACAACAACAACACATCGTAATGGAACCAATTCCAAACCCCTCTTGGCCCCAACCCACATGGTTCAATTCTCATCAAGACCCTCCCCACAAAAACCCCACCATCATCCACACACCCTGTTTCAACCTCAACAACGAGGAAGATGAACAAGAAGAAAACAACAACAATGAACAAGCCACTACTTCACAAGAAGGAGAAGGAGGAGGAGGAGAAGAAGGAGAAGAGGAAAAAGAAGAAAAGGAGCCAATGTTTGAGAAGCCACTGACTCCAAGCGATGTAGGGAAGCTCAACCGCCTAGTGATCCCAAAGCAACACGCGGAAAAGTACTTCCCGCTCGGCGCTGCTAATTCTCTCTCTTCTACTACTGCTTCTGATTCTGGGGAGTGTAAGGGGTTATTGCTCAGTTTCGAAGACGAGGCAGGGAAGTGTTGGAGGTTCCGATACTCCTATTGGAATAGTAGCCAGAGCTATGTCTTGACCAAAGGGTGGAGCCGTTACGTTAAGGACAAGCGCCTAGACGCCGGCGATGTCGTTTCGTTCGAGCGCCACCGCGACGACTCCCAGCGGCTGTTTATTAGGTGGAGACGAAGGTCGGCGGCGGCGGCGGCTGCGACAACGGCGCAGGTTAGCAGGACGGCACATGGTGGTGCTGGTGGTGATGGGAATATGAAGAATGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGTTGGAGTGGGGTGGACCAGTGGGTACTATTGTGCACATCCTTCTTATCCTACGCATCATCATCGTCATCAATTGGCGTATCAACAACAACATGAGCGTCTTCATGCAGGTAAAGGGTCCCAAGATCCGAACCAAAGGACAAGACCATTGGGGAACTGTTCAAGTTCTAGTTCTAGTTCGAGTTCGAAAGTACTTAGGCTGTTTGGGGTGAACATGGAATGCCAACCACAAGATGATTCTGGACCCTCAACACCCGAATGCTCCTACAATATGCAATCAACACAGGGTGCAGATACCAACCATTTGTACCACCTTCATCAACCTCCTAATTCTCACCCTCACATGGTACATCAACAACCATACTACTACTAG 1158 0.4991 MSTNHYSLDLPETTLWWTQHQPHPQQQQQQHIVMEPIPNPSWPQPTWFNSHQDPPHKNPTIIHTPCFNLNNEEDEQEENNNNEQATTSQEGEGGGGEEGEEEKEEKEPMFEKPLTPSDVGKLNRLVIPKQHAEKYFPLGAANSLSSTTASDSGECKGLLLSFEDEAGKCWRFRYSYWNSSQSYVLTKGWSRYVKDKRLDAGDVVSFERHRDDSQRLFIRWRRRSAAAAAATTAQVSRTAHGGAGGDGNMKNGGGGGGGGGGGVGVGWTSGYYCAHPSYPTHHHRHQLAYQQQHERLHAGKGSQDPNQRTRPLGNCSSSSSSSSSKVLRLFGVNMECQPQDDSGPSTPECSYNMQSTQGADTNHLYHLHQPPNSHPHMVHQQPYYY* 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod07g0272 385 MobiDBLite consensus disorder prediction 229 250 - -
Dod07g0272 385 MobiDBLite consensus disorder prediction 287 301 - -
Dod07g0272 385 Gene3D - 98 234 IPR015300 -
Dod07g0272 385 CDD B3_DNA 108 214 IPR003340 GO:0003677
Dod07g0272 385 MobiDBLite consensus disorder prediction 283 322 - -
Dod07g0272 385 SMART B3_2 110 224 IPR003340 GO:0003677
Dod07g0272 385 MobiDBLite consensus disorder prediction 302 322 - -
Dod07g0272 385 SUPERFAMILY DNA-binding pseudobarrel domain 106 224 IPR015300 -
Dod07g0272 385 Coils Coil 66 86 - -
Dod07g0272 385 MobiDBLite consensus disorder prediction 36 118 - -
Dod07g0272 385 MobiDBLite consensus disorder prediction 44 69 - -
Dod07g0272 385 Pfam B3 DNA binding domain 110 224 IPR003340 GO:0003677
Dod07g0272 385 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0156000 17 355 - -
Dod07g0272 385 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 17 355 IPR044800 GO:0003700
Dod07g0272 385 ProSiteProfiles B3 DNA-binding domain profile. 110 224 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod07g0272 Dod-Chr7 3399662 3402665 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod07g0272 106 358 RAV Transcription Factor Family AT5G06250 48.047 1.08e-63 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Dod07g0272 B3 1.3e-28 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod07g0272 - - aprc:113872948 402.905
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod07g0272 07 3399662 3402665 Dod07g0272 07 3399662 3402665 ECH
Dod01g2911 01 69533049 69535276 Dod07g0272 07 3399662 3402665 PCT