Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod07g0268 ATGGCAGAGCGCGGAACCGGCGGCGACCGTGGCGGCTTCGGCCGCGGATTCAGCGGTCGCGGACGCGGCGGCGACAGAGGCCGCGGAGGTCGCCGCAGAGGCGGCGGCCGCAGGGACGAGGAAGAGAAATGGGTTCCGGTAACAAAACTTGGTCGCTTAGTCAAAGAACAAAAAATCCAATCGTTGGAGCAAATCTACCTTCACTCTCTCCCAATCAAGGAGTACCAAATCATCGACACCTTGGTCGGTCCTTCCCTCAAGGACGAGGTTATGAAGATTATGCCAGTTCAGAAACAGACACGTGCGGGTCAGAGAACGAGGTTCAAGGCGTTTGTGGTGGTTGGTGATGGTAATGGACACGTTGGATTGGGAGTGAAGTGCAGCAAGGAGGTGGCGACGGCGATCCGCGGCGCGATTATTCTGGCGAAGCTTTCGGTTATTCCGGTGAGGAGAGGGTACTGGGGGAACAAGATTGGGAAGCCGCACACTGTTCCCTGCAAGGTTACGGGGAAGTGTGGATCCGTTACTGTTAGGATGGTGCCGGCGCCGAGAGGTGCTGGGATTGTGGCTGCTAGGGTTCCCAAGAAGGTGCTGCAGTTCGCTGGGATTGAGGATGTGTTTACTTCTTCGAGAGGATCCACTAAGACACTCGGAAATTTCGTCAAGGCTACCTTTGAGTGTCTGTTGAAGACTTACGGTTTTCTGACACCTGACTTCTGGAGAGAAACTCGCTTCCACAAATCTCCCTTCCAAGAGTACACAGATCTTCTAGCCAAGCCTACAATTGGAAAGCCCCTCATCCTTGAGGAAGATAGAGTCGACGTTTGA 828 0.5447 MAERGTGGDRGGFGRGFSGRGRGGDRGRGGRRRGGGRRDEEEKWVPVTKLGRLVKEQKIQSLEQIYLHSLPIKEYQIIDTLVGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVKATFECLLKTYGFLTPDFWRETRFHKSPFQEYTDLLAKPTIGKPLILEEDRVDV* 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod07g0268 275 SUPERFAMILY dsRNA-binding domain-like 82 151 - -
Dod07g0268 275 SUPERFAMILY Ribosomal protein S5 domain 2-like 162 242 IPR020568 -
Dod07g0268 275 ProSitePatterns Ribosomal protein S5 signature. 103 135 IPR018192 -
Dod07g0268 275 Gene3D - 43 148 - -
Dod07g0268 275 Gene3D - 149 241 IPR014721 -
Dod07g0268 275 Pfam Ribosomal protein S5, C-terminal domain 170 241 IPR005324 GO:0003735|GO:0005840|GO:0006412
Dod07g0268 275 PANTHER RIBOSOMAL S SUBUNIT 1 272 IPR000851 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Dod07g0268 275 MobiDBLite consensus disorder prediction 1 41 - -
Dod07g0268 275 TIGRFAM uS5_euk_arch: ribosomal protein uS5 39 246 IPR005711 GO:0003735|GO:0006412|GO:0015935
Dod07g0268 275 MobiDBLite consensus disorder prediction 21 41 - -
Dod07g0268 275 PANTHER 40S RIBOSOMAL PROTEIN S2-1-RELATED 1 272 - -
Dod07g0268 275 ProSiteProfiles S5 double stranded RNA-binding domain profile. 86 149 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Dod07g0268 275 Pfam Ribosomal protein S5, N-terminal domain 86 150 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod07g0268 Dod-Chr7 3337986 3340324 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod07g0268 40 260 Cytoplasmic Ribosomal Protein Gene Family AT3G57490 90.045 1.71e-148 415
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod07g0268 K02981 - gmx:100797105 453.366