Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod07g0202 ATGGAGAGTTCTCGTAGACCGTTCGATAATAATAGATCGAGAGAACCAGGTCCCAAGAAGCCACGATTGATGATGGAAGACCCTAATCCCAATTCGAGACCGTTCCCTCAGCGACAACAATTGGGTAATTCGGGGATTACGACGTTGTCGTCTACGAGGTTCAGGGCAAACGACAGAGACAACGAAGGCGGTTATCAGCCGCAGCCGGTGCAGCCACCGCCGCAGCAGCAGCACCAGGAGCTTGTGAATCAGTACAAGGCCGCGCTTGCTGAGCTCACTTTCAATTCGAAACCGATCATTACGAATTTGACCATAATTGCGGGCGAGAACCAATCGGCGGCGAAGGCGGTCGCCGCCACGGTTTGTGCTAACATTCTAGAGGTTCCAAGTGAACAAAAGCTGCCATCTCTTTATCTCTTAGACAGTATTGTTAAGAATATTGGGCGGGATTATATAAAGTATTTTGCTGCCAGACTACCTGAGGTATTCTGTAAGGCATACAGACAGGTTGATCCTGCCGTCCATCAAAGTATGAGGCATCTTTTTGGAACTTGGAAAGGAGTGTTTCCTCCTCATACCCTTCAGTCTATTGAGAAGGAACTGGGCTTTACACCTCCAGTCAATGGTTCAGCTTCTGCATCTGCTACTCTTAGGAGTGATTCGCAGTCTCAACGTCCACCACATAGCATCCATGTGAATCCCAAGTATTTAGAAAGGCAGCGTCTTCAGCAGTCTAGCCGGATTAAAGGAGTTGATGATATTACTGGAGCACTTGCAAACTCAAATGAGGACCCAGAGAGACCAGATAGAGCTTTGGGTGCTACCCGACCATGGGTGGATCCTAGTGTTAGTACTCATAGAGACGCTTTCAGTGATGCTGTTCTGGAAAAGAGTGTTGGTGCATCCTATGGAGGCGATGAATATGGTTCTGATTTTTCGAGGAATCTGGGCTCAGGTATGGGCAGAGCTAGTGGTAGGGCCACTGATTTAGGACATGACAAAAGTTGGTACAAAGCAGGTGGAGTTGCAGGAGCCATATCTGGACAAAAAAATGGTTTCAGTGTGAAGCATAGTTTTTCAAATACTGAAGCACCAAAGTATCATCAGCCAACACAAAGCATAAATAGCATACGGAGCAGTGTGATTTCTAATAGCTGGAAAAATTCTGAAGAAGAGGAGTATACATGGGATGAGATGAATTCTAGAGTGACGGGTCATGGTGCACCAAATCCTTGGACTGCAGATGATGAGAATTTGGAAGTTGAAGATCACGTCCAAATCAGAAACCCCTCTGGGGCAAATGCCGATAGAGAGGTGGCCTCTGAATCCCTAGGCGCTGAAAAGAAACAATTTCCTGCATTTCGGCGTCATTCATCGTTACCATGGCAACTGCCGGAGCAGCACTCACTTGATGAGATGAATCAGAAGTCAAGTCACTCGGAAGGATTTATGTCCACATTTGGTGGTTTTCCAGCCAATACAAATTCTTCTGCTGCCAGGATGGGCAATCGGCCTTTCCTGTCAAATGCAACAACAGGATTGGCAGGAATTGTGGGACAGCAACAATTTCATCCTGTAGGAGCTGAATCGCCCTCTGGGCAGTCACCCTTGCAACAACAGTCTTCATCACCACCAGTAAGTGTTCTCCACCCTCAAATGCAAAATTTGGCTGAGCAAAACCATCCTCAATCTCTTAAAACATCTCAGATTTTGGAAGGTCTACAGAGCCAATATATTAAAGATTCCTCACCTACCATTCCTCCTAATGTTCAGGTGGGTAACTTGCGAAGATCACAACAAAAGGATTTGCCGGGTCCATTCTCTTCAATGACTTCTTTTCAGCCAAGGCATCAGCAGCACTTGTCTCACACAGAAGTTACTCTGAAGACTGAGAAGCCACCCTTGTCTAAAGTTTCTCTGGCCAGAGAAACATCAGAACAGTCAACCACTATCAGTCTTCCTACAAGAAGTCGCCTGGATACAGGGAATCGTCCATCTCAATTAGGGGTTCGGCCTTCATGGTCCGGTGGGCCTTCTCCTGCCACATTAATTTCTTCAGTGTCCGCAATTGGAGCCCCATCGTCATTAATTCCTCCCAATGATAATTCATCTGCTCTGCCGAAAATACCTGAAAGAAAGGCTGAACAACCACCAAGGGCATCTACTCTGCCACCAGGTTCCTTGGATGTCAGCGGTGCCTCAGCCCAGACATCAAGTGCCACCAGTAATGCCTTAAATCCAATTGCAAACCTTTTAAGCTCATTAGTTGCAAAGGGTTTGATATCTGCAGAATCAGAGTCACGAACTAAGGTGCCATCTGAGATCCTGGCTCGTTTGGAAGATCAAAGAGAAAGTACTGCCACCAGTAGCTCTTTACCTGTTGCTTCAGTGTCTGGTTCTGCAGCGCTTCCTGTACCTTCTGCCACAGATGATGTAGATGATACTGCAAAATCACCTGTATCCTTGTCTGAATCAACTAGCACAGAGATTAGAAACCTCATTGGCTTCGAGTTTAAGCCTGATGTAATCCGAGAATTGCATCCGCCTGTCATTAAAGGATTATTTGAAGATCTTCCACATCATTGTAGTGTTTGTGGCATTGGGCTTAAATTCCAAGAACAGCTTAATAGACACTTGGAGTGGCATGCCACAAGAGAAAGAGAGAGAAATGATTGGGCATCAAGACAATGGTATCCAAAGTCAAGTGACTGGATCATTGGCAAGGCTGAATATCTTTCTGAGTTTACTGAATTGGTAGATACACACGGCAAGGAAACCAGGAGTCAAGAGGATGCAATGGTTCAAGCAGATGAAAACCAATGTTTGTGTGTGTTGTGTGGTGAGGTGTTTGAAGATTTCTTCTGCCAGGAAAGTGGTGAGTGGATGTTCAAAGGGGCAGTTTACATGACTCACTTAGATAGCACTAGGGAGCCGGGAATTAGAAATGTGAGTACTGCAAGGGGTCCCATCATTCATGCAAGGTGCTCATCAGAGAACTCAATATCTAGTGTCCTCAAGATGGAACAGGATTAA 3033 0.459 MESSRRPFDNNRSREPGPKKPRLMMEDPNPNSRPFPQRQQLGNSGITTLSSTRFRANDRDNEGGYQPQPVQPPPQQQHQELVNQYKAALAELTFNSKPIITNLTIIAGENQSAAKAVAATVCANILEVPSEQKLPSLYLLDSIVKNIGRDYIKYFAARLPEVFCKAYRQVDPAVHQSMRHLFGTWKGVFPPHTLQSIEKELGFTPPVNGSASASATLRSDSQSQRPPHSIHVNPKYLERQRLQQSSRIKGVDDITGALANSNEDPERPDRALGATRPWVDPSVSTHRDAFSDAVLEKSVGASYGGDEYGSDFSRNLGSGMGRASGRATDLGHDKSWYKAGGVAGAISGQKNGFSVKHSFSNTEAPKYHQPTQSINSIRSSVISNSWKNSEEEEYTWDEMNSRVTGHGAPNPWTADDENLEVEDHVQIRNPSGANADREVASESLGAEKKQFPAFRRHSSLPWQLPEQHSLDEMNQKSSHSEGFMSTFGGFPANTNSSAARMGNRPFLSNATTGLAGIVGQQQFHPVGAESPSGQSPLQQQSSSPPVSVLHPQMQNLAEQNHPQSLKTSQILEGLQSQYIKDSSPTIPPNVQVGNLRRSQQKDLPGPFSSMTSFQPRHQQHLSHTEVTLKTEKPPLSKVSLARETSEQSTTISLPTRSRLDTGNRPSQLGVRPSWSGGPSPATLISSVSAIGAPSSLIPPNDNSSALPKIPERKAEQPPRASTLPPGSLDVSGASAQTSSATSNALNPIANLLSSLVAKGLISAESESRTKVPSEILARLEDQRESTATSSSLPVASVSGSAALPVPSATDDVDDTAKSPVSLSESTSTEIRNLIGFEFKPDVIRELHPPVIKGLFEDLPHHCSVCGIGLKFQEQLNRHLEWHATRERERNDWASRQWYPKSSDWIIGKAEYLSEFTELVDTHGKETRSQEDAMVQADENQCLCVLCGEVFEDFFCQESGEWMFKGAVYMTHLDSTREPGIRNVSTARGPIIHARCSSENSISSVLKMEQD* 1011
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod07g0202 1010 MobiDBLite consensus disorder prediction 599 679 - -
Dod07g0202 1010 MobiDBLite consensus disorder prediction 782 797 - -
Dod07g0202 1010 SMART 558neu5 80 202 IPR006569 -
Dod07g0202 1010 MobiDBLite consensus disorder prediction 640 679 - -
Dod07g0202 1010 MobiDBLite consensus disorder prediction 1 79 - -
Dod07g0202 1010 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 1 1007 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Dod07g0202 1010 MobiDBLite consensus disorder prediction 525 548 - -
Dod07g0202 1010 Gene3D - 72 202 IPR008942 -
Dod07g0202 1010 CDD CID_Pcf11 82 194 - -
Dod07g0202 1010 SUPERFAMILY ENTH/VHS domain 77 208 IPR008942 -
Dod07g0202 1010 MobiDBLite consensus disorder prediction 694 735 - -
Dod07g0202 1010 MobiDBLite consensus disorder prediction 208 279 - -
Dod07g0202 1010 MobiDBLite consensus disorder prediction 32 54 - -
Dod07g0202 1010 MobiDBLite consensus disorder prediction 780 824 - -
Dod07g0202 1010 MobiDBLite consensus disorder prediction 599 621 - -
Dod07g0202 1010 ProSiteProfiles CID domain profile. 77 205 IPR006569 -
Dod07g0202 1010 MobiDBLite consensus disorder prediction 1 22 - -
Dod07g0202 1010 PANTHER RNA POLYMERASE II-BINDING DOMAIN PROTEIN 1 1007 - -
Dod07g0202 1010 MobiDBLite consensus disorder prediction 208 229 - -
Dod07g0202 1010 ProSitePatterns Zinc finger C2H2 type domain signature. 862 882 IPR013087 -
Dod07g0202 1010 MobiDBLite consensus disorder prediction 524 548 - -
Dod07g0202 1010 Pfam CID domain 86 196 IPR006569 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod07g0202 Dod-Chr7 2584340 2591814 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod07g0202 53 399 C2H2 Transcription Factor Family AT4G04885 38.440 1.44e-58 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dod07g0202 CID 2.2e-14 CL0020
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod07g0202 K14400 - gmx:100807857 1176
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod07g0202 07 2584340 2591814 Dod07g0202 07 2584340 2591814 ECH
Dod01g2832 01 68546483 68550396 Dod07g0202 07 2584340 2591814 PCT