Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod07g0169 ATGGCGGCGGCGGTTGTTGTTCCGGCGGCGACGGCGTCGCTCTACGTCGGAGACCTTCATCCAGAGGTGACGGAAGGCGAGATCTTCGAGGCGTTCTCGGAGCTCGGGAGCATCGCTTCCGTTCGCATTTGCAGAGACTCCGCCACAGGAAGGTCCCTCTGTTACGGTTATGTCAACTTCATCTCTCACCAAGACGCAAGTCGTGCAATTGAATTGAAGAATCATTCTTCATTGCATGGAAAAGTGATTAGGGTCATGTGGTCACATCGTGATCCTGATACAAGAAAAAGTGGCAGAGGGAATGTTTTTGTTAAGTTTGAGTCAGAGGAATCTGCAAGTGCTGCCATCGAGAAGCTGAATGGCTCTAATGTTAAAGATAAGCAGATATATGTTGGAAATTTTGTCAGAAAGAGTGATCGCATATTGCCTGATCCTAATGCCAAATACACAAATTTGTACGTCAAGAATTTGGACCCAGATGTTACAGAAGCAATTCTTCAGGAAAAGTTCTCCATTTTTGGGAAAATTATTAGCTTGGCTATTGCCAAAGATGAAAATGGAATGTCTAAGGGTTTTGCATTTGTGAACTATGATAACCCAGATGATGCTAGACAGGCAATGGAAGCAATGAATGGATCACAATTCGCAGGTTCAAAGAATCTGTATGTAGCCAAGGCACAAAAGAAGTCTGAGCGTGAGCAGCTCTTGCACCATCAATTTGAGGAGAAACGTAAGGAACAAATTATTAAATATAAGGTAATTCCATGCCCTTTCTCCCGCATTTGTCTTACCGTCAAAAGTTTTCTTAGTATATCCTCATGTAACCTTCAGGGATCAAACATTTATGTGAAGAATATTAATGATAGTGTCACGGACGAACAACTACGAGAGCACTTTAGTGCATGTGGCACAATAACATCTGCTAAAGTCATGCGAGATGAGAAAGGTATAAGCAAGGGGTTTGGTTTTGTCTGCTTCTCTACAGCTGAGGAGGCCAATAAAGCTGTGAACACTTTTCATGGATGCATGTTCCATGGTAAACCACTATATGCTGCTATTGCTCAAAGGAAAGAGGATAGGCAAACACAGTTGCAGCTCCAGTTTGCTCAGCAACTATCAGGACTAGGTGGACCTTCAAATGCAGTTGTTCCTGGTGGATATCCTCGTTACTTCTATGCCACTAGTGGTGTTGTTTCACATGTGCCTTCTCGAGCTGGGCTGATGTATCAACCTCTGGGATTGAGGTCAGGATGGAGGGTTAATGGTTTTGCACCTCCCACTAGACCATTTCAACAATCACCAGCTCCTAATGTTTCAAACAATACAAGGCAGCATATGCAAAAGAGGGGCAAGATGAATGGGGGCTCAAATTCGCAAGGAAAAGCATACTCTGGTACCACACAACTGCAACAGCTTTCTAAGTCAGCGGCCTCTTCAAAAGAGTCAAGTACTCAACAGGCTACATATGTACCCAGTGGACACCAGCATGAGATGGAAAAAGGATCTAGAATTTCATCTTCTGGAGGGTCTCAGCGATCAGAAATACTGCATAGCATGCTTGCCACTGCTATTCCTGAGCAACAGAAACAGATGCTTGGCGAGCGTCTTTTCCCACTCATCAAGAAACTCAAGCCTAGCCTAGCAGCAAAGATTACGGGAATGCTTTTGGAGATGGACAATGCAGAATTGCTGCTGCTTCTTGAATCACCAGAGTCCCTTTCTGCAAAGGTGGAAGAAGCTGTGCAAGTGCTTAATAACTCTACTACCAAAGTTTCTGGCAAGGATTCACTTCATTCAAATTTCCTTTCAGCTGAGGTTGCAGTCAATTGA 1830 0.441 MAAAVVVPAATASLYVGDLHPEVTEGEIFEAFSELGSIASVRICRDSATGRSLCYGYVNFISHQDASRAIELKNHSSLHGKVIRVMWSHRDPDTRKSGRGNVFVKFESEESASAAIEKLNGSNVKDKQIYVGNFVRKSDRILPDPNAKYTNLYVKNLDPDVTEAILQEKFSIFGKIISLAIAKDENGMSKGFAFVNYDNPDDARQAMEAMNGSQFAGSKNLYVAKAQKKSEREQLLHHQFEEKRKEQIIKYKVIPCPFSRICLTVKSFLSISSCNLQGSNIYVKNINDSVTDEQLREHFSACGTITSAKVMRDEKGISKGFGFVCFSTAEEANKAVNTFHGCMFHGKPLYAAIAQRKEDRQTQLQLQFAQQLSGLGGPSNAVVPGGYPRYFYATSGVVSHVPSRAGLMYQPLGLRSGWRVNGFAPPTRPFQQSPAPNVSNNTRQHMQKRGKMNGGSNSQGKAYSGTTQLQQLSKSAASSKESSTQQATYVPSGHQHEMEKGSRISSSGGSQRSEILHSMLATAIPEQQKQMLGERLFPLIKKLKPSLAAKITGMLLEMDNAELLLLLESPESLSAKVEEAVQVLNNSTTKVSGKDSLHSNFLSAEVAVN* 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod07g0169 609 Gene3D - 510 601 - -
Dod07g0169 609 PANTHER POLYADENYLATE-BINDING PROTEIN 277 492 - -
Dod07g0169 609 PANTHER POLYADENYLATE-BINDING PROTEIN 5 105 - -
Dod07g0169 609 CDD RRM4_I_PABPs 278 356 - -
Dod07g0169 609 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 281 349 IPR000504 GO:0003723
Dod07g0169 609 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 14 84 IPR000504 GO:0003723
Dod07g0169 609 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 152 218 IPR000504 GO:0003723
Dod07g0169 609 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 94 129 IPR000504 GO:0003723
Dod07g0169 609 PANTHER RNA BINDING PROTEIN 5 105 - -
Dod07g0169 609 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 150 228 IPR000504 GO:0003723
Dod07g0169 609 SUPERFAMILY RNA-binding domain, RBD 276 377 IPR035979 GO:0003676
Dod07g0169 609 Gene3D - 269 367 IPR012677 -
Dod07g0169 609 SMART poly_2 524 587 IPR002004 GO:0003723
Dod07g0169 609 SMART rrm2_1 151 223 IPR003954 GO:0003676
Dod07g0169 609 SMART rrm2_1 55 132 IPR003954 GO:0003676
Dod07g0169 609 SMART rrm2_1 280 352 IPR003954 GO:0003676
Dod07g0169 609 MobiDBLite consensus disorder prediction 423 512 - -
Dod07g0169 609 PANTHER RNA BINDING PROTEIN 103 252 - -
Dod07g0169 609 PANTHER POLYADENYLATE-BINDING PROTEIN 509 593 - -
Dod07g0169 609 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 12 90 IPR000504 GO:0003723
Dod07g0169 609 SUPERFAMILY RNA-binding domain, RBD 12 138 IPR035979 GO:0003676
Dod07g0169 609 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 279 356 IPR000504 GO:0003723
Dod07g0169 609 SMART rrm1_1 280 352 IPR000504 GO:0003723
Dod07g0169 609 SMART rrm1_1 151 224 IPR000504 GO:0003723
Dod07g0169 609 SMART rrm1_1 13 86 IPR000504 GO:0003723
Dod07g0169 609 SUPERFAMILY PABC (PABP) domain 516 591 IPR036053 GO:0003723
Dod07g0169 609 Gene3D - 6 92 IPR012677 -
Dod07g0169 609 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 512 589 IPR002004 GO:0003723
Dod07g0169 609 PANTHER RNA BINDING PROTEIN 277 492 - -
Dod07g0169 609 PANTHER RNA BINDING PROTEIN 509 593 - -
Dod07g0169 609 Gene3D - 93 133 IPR012677 -
Dod07g0169 609 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 90 131 IPR000504 GO:0003723
Dod07g0169 609 Gene3D - 136 246 IPR012677 -
Dod07g0169 609 CDD RRM1_I_PABPs 13 92 - -
Dod07g0169 609 PANTHER POLYADENYLATE-BINDING PROTEIN 103 252 - -
Dod07g0169 609 SUPERFAMILY RNA-binding domain, RBD 140 234 IPR035979 GO:0003676
Dod07g0169 609 Pfam Poly-adenylate binding protein, unique domain 520 584 IPR002004 GO:0003723
Dod07g0169 609 MobiDBLite consensus disorder prediction 433 492 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod07g0169 Dod-Chr7 2247442 2253024 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod07g0169 11 607 Eukaryotic Initiation Factors Gene Family AT2G36660 46.729 7.42e-180 521
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod07g0169 K13126 - gmx:100779547 767.303
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod07g0169 07 2247442 2253024 Dod07g0169 07 2247442 2253024 ECH
Dod01g2801 01 68132179 68137185 Dod07g0169 07 2247442 2253024 PCT