Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod07g0124 ATGTTCCAAACAGCCTGCATTTTGGTAATCTCTCTTATGGGGTCCTTTCTACCTTATGGAAGAGCAATGCTGAACCTCACTCTCCCGGGACAACATCCAGACCCTGAAGCTGTTGCCCAACAAGTTCATAGGAAGGTTAATGCTTCAATTACAAGAAGGGAGATGCTAGCAGTGTCACAAAAAGATGAGTCATCATGCCTAACAGGGAACCCCATTGATGATTGCTGGAAATGTGACCCAAATTGGGCCAACAACAGGCAGAGGCTAGCTGATTGTGCAATTGGGTTTGGTCAGAATGCAAAAGGTGGCAAAGGTGGTGAGTTCTACATTGTCACTGACTCATCAGATAATGACCCAGTGAACCCAAAACCTGGCACATTGAGATATGCTGTGATACAAAATGAGCCACTTTGGATTGTGTTCCCTAGTAACATGATGATTAAGCTTTCTCAGGAGCTCATATTCAATAGTTACAAGACCATTGATGGGCGTGGAGCTGATGTTCACATTGTGGGAGGAGGGTGCATCACTCTTCAGTATATAAGCAATGTCATCATACACAATGTTCACATCCACCATTGTCATCCCTCAGGTAATGCTATGGTGCGTTCGAGTCCAGAGCACTACGGGTACCGCACCGAATCGGACGGTGACGGCATCTCCATATTCGGATCTCGAGACATCTGGATCGACCATTGCACCCTCTCGCGTTGCAAGGACGGTCTGATCGACGCTGTGATGGGCTCCACGGCTATCACCGTATCCAACAGCCACTTCTCCCACCACAACGACGTCATGCTATTGGGCCACAGTGACCACTACCTCCCTGACTCTGCCATGCAGGTGACTATCGCCTTCAACCGATTCGGCGACAACCTTGTCCAGCGCATGCCACGTTGCCGACTTGGATATGTCCATGTCGTCAATAATGACTTCACTGCCTGGCAGATGTATGCAATTGGGGGCAGCGCATCCCCTACTGTTAATAGCCAAGGGAACCGGTATGCTGCCCCCGACGATGCATTTGCCAAGCAAGTGACGAAGCGATTGGACACAGGAGAAGGCGAGTGGACAGGGTGGAACTGGAGATCAGAGGGGGATGTGATGGTGAATGGGGCATTCTTTGTGCCTTCTGGGGAAGGTGCTGAGGTTAAGTATGAGAAGGCTTATAGTGTGGAGCCTAAGTCTGCTGATAGAATTACCATGCTCACCATGTTTTCTGGAGTTCTTGGGGTTGCCAGGGACAATAACGTGGGCATGTGGACTAGAGGACCCAACGATGGTGGTAGTTATATTTCACAATACGGTCCAGAATACACCGATGATATGTCCCGGAGTACAGTGAAGTTGCCACCTTCACATATCATGACTCTTGTATATGCTTTTGTTGCATTCTTGTGCTTGTTATCTCACACAATTCCCCCCCTATTGATATTACTTCTATTATAA 1449 0.4831 MFQTACILVISLMGSFLPYGRAMLNLTLPGQHPDPEAVAQQVHRKVNASITRREMLAVSQKDESSCLTGNPIDDCWKCDPNWANNRQRLADCAIGFGQNAKGGKGGEFYIVTDSSDNDPVNPKPGTLRYAVIQNEPLWIVFPSNMMIKLSQELIFNSYKTIDGRGADVHIVGGGCITLQYISNVIIHNVHIHHCHPSGNAMVRSSPEHYGYRTESDGDGISIFGSRDIWIDHCTLSRCKDGLIDAVMGSTAITVSNSHFSHHNDVMLLGHSDHYLPDSAMQVTIAFNRFGDNLVQRMPRCRLGYVHVVNNDFTAWQMYAIGGSASPTVNSQGNRYAAPDDAFAKQVTKRLDTGEGEWTGWNWRSEGDVMVNGAFFVPSGEGAEVKYEKAYSVEPKSADRITMLTMFSGVLGVARDNNVGMWTRGPNDGGSYISQYGPEYTDDMSRSTVKLPPSHIMTLVYAFVAFLCLLSHTIPPLLILLLL* 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod07g0124 482 PANTHER PECTATE LYASE 1 434 - -
Dod07g0124 482 Gene3D - 69 411 IPR012334 -
Dod07g0124 482 PANTHER PECTATE LYASE 18-RELATED 1 434 IPR045032 GO:0030570
Dod07g0124 482 SUPERFAMILY Pectin lyase-like 64 398 IPR011050 -
Dod07g0124 482 PRINTS Pollen allergen Amb family signature 360 384 IPR018082 -
Dod07g0124 482 PRINTS Pollen allergen Amb family signature 389 412 IPR018082 -
Dod07g0124 482 PRINTS Pollen allergen Amb family signature 116 141 IPR018082 -
Dod07g0124 482 PRINTS Pollen allergen Amb family signature 152 168 IPR018082 -
Dod07g0124 482 PRINTS Pollen allergen Amb family signature 216 237 IPR018082 -
Dod07g0124 482 PRINTS Pollen allergen Amb family signature 296 315 IPR018082 -
Dod07g0124 482 PRINTS Pollen allergen Amb family signature 92 109 IPR018082 -
Dod07g0124 482 PRINTS Pollen allergen Amb family signature 318 337 IPR018082 -
Dod07g0124 482 SMART amb_all 144 341 IPR002022 -
Dod07g0124 482 Pfam Pectate lyase 153 333 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod07g0124 Dod-Chr7 1483916 1488721 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod07g0124 1 478 Polysaccharide Lyase AT3G53190 68.107 0.0 656
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod07g0124 K01728 - gmx:100815062 814.298
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g2772 01 67562742 67567750 Dod07g0124 07 1483916 1488721 PCT