Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod07g0090 ATGGAGAAGACAGTGGCATATGAGAATGATGATCTCAACCTCAAGGCAACAGAGCTAAGACTGGGGTTGCCAGGGACAGAGGAAACCACCATGGCTAGTCCTAGTCATGTTGCTAAAAACAAGAGGCAACTGCCGGAGACCTCTGAGGAGTCTGTTTCTATTTCCAACAAGGCCCAACATGAGGAGAGTGATCATGTTCATGCAGCCCCTCCTTCCAAGACAAAGATAGTGGGGTGGCCACCAATCAGATCATATAGGAAAAACAGCCTCCAGGAGTCTGAGGGTGGAGGGATCTATGTGAAAGTGAGCATGGATGGAGCTCCTTACCTCAGAAAGATTGACTTGAGGCCCTATGGAGGCTATCCACAACTCCTCAAAGCTCTAGAAACCATGTTCAAGTTGACCATAGGTGAGCACTTTGACAGAGAGGGTTATAAGGGATCTGAGTATGCACCAACATATGAAGACAAGGACGGTGACTGGATGCTAGTTGGAGATGTGCCATGGGACATGTTTATCACTTCCTGCAAAAGGCTAAGAATCATGAAAGGGTCAGAAGCTAGGGGGTTGGGTTGTGGTGTATAG 585 0.4786 MEKTVAYENDDLNLKATELRLGLPGTEETTMASPSHVAKNKRQLPETSEESVSISNKAQHEESDHVHAAPPSKTKIVGWPPIRSYRKNSLQESEGGGIYVKVSMDGAPYLRKIDLRPYGGYPQLLKALETMFKLTIGEHFDREGYKGSEYAPTYEDKDGDWMLVGDVPWDMFITSCKRLRIMKGSEARGLGCGV* 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod07g0090 194 MobiDBLite consensus disorder prediction 28 54 - -
Dod07g0090 194 Pfam AUX/IAA family 39 191 IPR033389 -
Dod07g0090 194 MobiDBLite consensus disorder prediction 55 69 - -
Dod07g0090 194 MobiDBLite consensus disorder prediction 18 73 - -
Dod07g0090 194 ProSiteProfiles PB1 domain profile. 97 184 IPR000270 GO:0005515
Dod07g0090 194 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 11 191 IPR003311 GO:0005634|GO:0006355
Dod07g0090 194 PANTHER AUXIN-INDUCED PROTEIN 11 191 - -
Dod07g0090 194 SUPERFAMILY CAD & PB1 domains 87 183 - -
Dod07g0090 194 Gene3D - 91 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod07g0090 Dod-Chr7 926626 927584 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod07g0090 101 193 B3 DNA Binding Superfamily AT4G23980 34.409 3.34e-10 56.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Dod07g0090 AUX_IAA 8.1e-52 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod07g0090 K14484 - gmx:100800212 296.975