Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod07g0080 ATGTCTGTCTCTATTCTGGTGAATTGGTTCGGCTTATTAGCTCTTCCCAACTTCAATTGCGATATCAACTGGAACTTTCTGCAATCTTATTTTGCTAATCATATTCAAATAAAGAAAATGTCATCACTGGGCACTTCCAAGGGGATTCTCGAGATTGCCAAGTTTGGGGTGTATATAACTGTCCCCATCGTACTTATGTATACTTTCGCCAACAATACCAAGAACCTTCAGAAATTCATGGGAAATGTTGAGTGCAAAATTCAGCAGAGACATTATACCATGGTTGGATTGGAACTCATACCCATAGGTACAATTTTGGTTGTTCTAACCAACCAGGTCTTGACAACAGCTTCTGCAGCGCATGATGTTCTTATTGGTAAAGAAAGTTTCAAGGTCCTTTCAAAACACCTGCTTGATATTGCGCCAGTCCTAAAGGAATTACAACTTCAGGAGTTGAACGAGTCTCAAGCTGCAAGGGTTGCTCTAGAGTCTCTTGAAGCAGATGTCAACAGACTACAGAATGAGATGCAAAGGGTGGAGTTTGAGGCTTCAGAATCTCAGCTTCAAATTGTTGACAAACTGAACCATGGAATTAGAGAGCAGAAAAGGGATCAAGCTTTTGCAAATGACATTCTTGAGGAAATAGCAAGGGCAGTTAGGGTACCAGTGGAGCCCTCAGAGATAAGCAAAGAGCTTGACAGCATTAGGTGGGAAAAAGAAGAAGCTGCCAACAGGAAAGAAAGAGCTGAATTTATTTTCTTGGAGCAGATCATCGAGCTACTCTCTAGAGCTGATGCTGCAAGGGATTATGAAGAAGTTAAGAAGCAATACTTTGAAAGGGTTCAGGTAATAGAGCGATATGATTCAAGGGAAAAACATATCCCGCCGCTTAATTCTTTCCTATGTTGCATACTAGAGTTGTTATGGACTGACCCAGAAACGAAAGAGGTTCTTGAAGATACTACCTTGAGGTCAAACATCCCACTGAGACAATCCATAGAAGAGTGGAGAGAACTGAATTACTGCTTTATAATAAGGTCTATCAAGGAAAACTTGTTATCCAATTCTGACTTAGTTTCGCCAGAATACCTGTGCCGAATTCAGGCCCTCATAGGAGAGAATTCTATAAACAAGGATTGGGTTTCTATTGGAGGGCTTACTGATATTCTTATCTCCATCCTTGGGAACTCTCATTCCAGAGAAGTGAAAACGAATATTTTGATTACTTTGAAAGGACGCCGTAGAGGGGCATGCAAGAAACAAGATGAGGAAAACATTTCTAGAGCAGCTAAGTTTGGCTGGTACAAACCGCTTGTTGATCACTTGATTCAAGGATCGGAGTCTTCAAGAATGTTAATGGCCAAAGTAATAATTAATTTGGAGTCGAAAGAACTAAACTTGAAACACCTTGGGAAGCAAGGAGTTATACCTCCTTTGCTAGAAATGTTGTCAGGAAGCATTGAATCAAAAGAGGTATCATTATCAGCCCTGGTTAAACTAACAGGATGCCAGGCCAATAAGGGGATTATCGCTGCAAATGGTGGTGTGCCTCTTGTTCTAGATTTAATGTTCTCTCGCAGGATGCGGTCACTCATTACTATTAAATGCTGTGAAATCCTTGAGAAGCTTTCTTCTGATGATGATGGAATTGATTTCTTTGTTGATGGAGAACAGAAACTTCTTGAGTTAGATGACATCATTGTCAATCTGCTAGAGCTACAACGGATTCCTAACTCAGCTCACAACTTCCGCAAGGCCGCGTTGCGTGCCCTTCTTGGCATTTGCAGGTTTGAGAGTGGTTTAGTTAACAAGGCAGTCCTTGCAGCCAATGGTGTATCACTAATCCTTCCCCTTCTTGATGATGCTGACTCAGAAATCAGGGAGACTGCAATAAATCTTCTCTTTCCTTTCTCTCAACACGAACCAGAAGGAGTAGTTGAGTACCTCTTAAGGCCTAGAAGGCTGGAAGCTTTAGTTGGAGAACTCACAATGAAGTTGATTGACTTGGATGGCCTTGATGCAATCATAACCATTCTGAAGAATGGCACAATGGAAGCAAAAGAAAACGCTCTCAGTGCACTCTTCAGGTTCACAGATCCCACAAATGTCGAGTCGCAGCGTGATTTGGTAAAACGAGGAATATATCCTTTTCTTGAAAGTTTCCTCAGCACTGGCTCAGTGACAGCAAAGGCCAGAGCAGCAGCATTCATTGGTGATCTTTCTATGAGCACTCCAAAGCTCACATTTGTCTCCAAACCAACTGGCTGCCGGCGGTGCTTTAGATCATCACGAGTTCCTTTGTGTACAGCACATGGAAGTGTATGCAGTGTGGCTTCCACATTTTGTCTGTTGGAAGCAAATGCTTTGCCAGGCTTGATAGAGCTGTTACATGGGGAGGTTCATGCAATTGCTTATGAAGCAATACAGACACTTTCCACATTGGTTTTGGAAGACTTTCTTCAAAGGGGAGCCCGAGTGTTGCATCAGTCAAATGCAATGAGGCCCTTGTTGGAGATATTAAATTGGGGAACTGATTCTCTAAAGGCAGAAGCTCTAGGATTGTTGGAGAAGGTGTTTGTCTCAAAGGAAATGGTAGAATACTATGGAACAACAGCCAGAATGCGTCTGGTTGGTCTGACTGGCAACGTGGGGATGGCCACCTAA 2664 0.4238 MSVSILVNWFGLLALPNFNCDINWNFLQSYFANHIQIKKMSSLGTSKGILEIAKFGVYITVPIVLMYTFANNTKNLQKFMGNVECKIQQRHYTMVGLELIPIGTILVVLTNQVLTTASAAHDVLIGKESFKVLSKHLLDIAPVLKELQLQELNESQAARVALESLEADVNRLQNEMQRVEFEASESQLQIVDKLNHGIREQKRDQAFANDILEEIARAVRVPVEPSEISKELDSIRWEKEEAANRKERAEFIFLEQIIELLSRADAARDYEEVKKQYFERVQVIERYDSREKHIPPLNSFLCCILELLWTDPETKEVLEDTTLRSNIPLRQSIEEWRELNYCFIIRSIKENLLSNSDLVSPEYLCRIQALIGENSINKDWVSIGGLTDILISILGNSHSREVKTNILITLKGRRRGACKKQDEENISRAAKFGWYKPLVDHLIQGSESSRMLMAKVIINLESKELNLKHLGKQGVIPPLLEMLSGSIESKEVSLSALVKLTGCQANKGIIAANGGVPLVLDLMFSRRMRSLITIKCCEILEKLSSDDDGIDFFVDGEQKLLELDDIIVNLLELQRIPNSAHNFRKAALRALLGICRFESGLVNKAVLAANGVSLILPLLDDADSEIRETAINLLFPFSQHEPEGVVEYLLRPRRLEALVGELTMKLIDLDGLDAIITILKNGTMEAKENALSALFRFTDPTNVESQRDLVKRGIYPFLESFLSTGSVTAKARAAAFIGDLSMSTPKLTFVSKPTGCRRCFRSSRVPLCTAHGSVCSVASTFCLLEANALPGLIELLHGEVHAIAYEAIQTLSTLVLEDFLQRGARVLHQSNAMRPLLEILNWGTDSLKAEALGLLEKVFVSKEMVEYYGTTARMRLVGLTGNVGMAT* 888
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod07g0080 887 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 310 418 - -
Dod07g0080 887 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 420 662 - -
Dod07g0080 887 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 99 171 - -
Dod07g0080 887 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 420 662 - -
Dod07g0080 887 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 661 881 - -
Dod07g0080 887 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 168 305 - -
Dod07g0080 887 SUPERFAMILY ARM repeat 197 859 IPR016024 -
Dod07g0080 887 SMART arm_5 599 639 IPR000225 GO:0005515
Dod07g0080 887 SMART arm_5 820 860 IPR000225 GO:0005515
Dod07g0080 887 SMART arm_5 503 545 IPR000225 GO:0005515
Dod07g0080 887 SMART arm_5 659 699 IPR000225 GO:0005515
Dod07g0080 887 SMART arm_5 776 816 IPR000225 GO:0005515
Dod07g0080 887 SMART arm_5 462 502 IPR000225 GO:0005515
Dod07g0080 887 Gene3D - 556 750 IPR011989 -
Dod07g0080 887 Gene3D - 762 875 IPR011989 -
Dod07g0080 887 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 310 418 - -
Dod07g0080 887 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 99 171 - -
Dod07g0080 887 Coils Coil 155 189 - -
Dod07g0080 887 Gene3D - 241 555 IPR011989 -
Dod07g0080 887 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 661 881 - -
Dod07g0080 887 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 168 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod07g0080 Dod-Chr7 829629 845381 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod07g0080 383 874 U-box Gene Family AT1G76390 22.898 1.74e-15 79.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod07g0080 - - csin:114298668 782.326