LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dod07g0064	ATGAACCCTCAAGGTCCTGTGGTTGCTCCCCAACCAATGGAGGGGCTTCATGAGAATGGTCCTCCACCATTCCTCACAAAGACATATGACATAGTTGATGATGTTTCCACTAACCAGATTGTCTCATGGAGCAAAGGGAACAACAGCTTCGTTGTGTGGGATCCTCAGGCATTTTCCATCACTCTTCTCCCAAGATACTTCAAGCACAACAACTTCTCTAGCTTTGTCAGGCAGCTTAACACCTATGGATTTAGAAAGGTAGATCCAGATAAGTGGGAGTTTGCTAATGAAGGGTTTCTTAGAGGACAAAGGCATCTTTTGAAGAACATTAGGAGGAGGAAGACAACTCAATCTCAAACTCCACAGCAAGCACTAGACCCTTGTGTTGAAGTGGGGCGGTTTGGTTTAGATGGAGAAGAAGTTGATAGGTTGAGGCGTGACAAGCAAGTCCTCATTTTGGAGCTTGTGAAACTTAGGCAACAACAGCAGAATACCAAAAGCCACATTCAATTAATAGAAACTAGGCTTAAAAGGACAGAACAAAAGCAGAAACAGATGATGTACTTCTTGGCAAGGGCAATGCAGAACCCCAGCTTTATGCAACAACTGATTCAGAAAAAGGAGTGGAGAAAGGAGCTGGAGGAAGCTCTTTCTAAGAAAAGAAGAATAACTATTGATCAAGGGCCTAGTAGGGTGGATGTTGATGAATTGAGTTATGCTAAAGAGTGCTCAGCTTTTGTGAAAATTGAACAGCAGGACTACATTGATATGTCAGAGCTTGAGGTTTGTGACATGGACCTTACTATGAACATGGAGGAACAAATTGGTAACCAAAAGAACCTAGAGGAGAGAGAAGTTGAACTTGAAAGCTGTGGAAATGAAGGCATTGAAGAAGTGTTTTGGGAAGATTTTCTGTATGAGGGTCAGGGTAATGAAGAAGATAATCTACAAGGATTTAGAGAAGATGATGAAGATATAAATGTGTTAGTTGAGGAACTTGGTTATTTAGCCTCAAGTCCTAAATGA	1026	0.4162	MNPQGPVVAPQPMEGLHENGPPPFLTKTYDIVDDVSTNQIVSWSKGNNSFVVWDPQAFSITLLPRYFKHNNFSSFVRQLNTYGFRKVDPDKWEFANEGFLRGQRHLLKNIRRRKTTQSQTPQQALDPCVEVGRFGLDGEEVDRLRRDKQVLILELVKLRQQQQNTKSHIQLIETRLKRTEQKQKQMMYFLARAMQNPSFMQQLIQKKEWRKELEEALSKKRRITIDQGPSRVDVDELSYAKECSAFVKIEQQDYIDMSELEVCDMDLTMNMEEQIGNQKNLEEREVELESCGNEGIEEVFWEDFLYEGQGNEEDNLQGFREDDEDINVLVEELGYLASSPK*	342

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dod07g0064	341	Coils	Coil	206	226	-	-
	Dod07g0064	341	MobiDBLite	consensus disorder prediction	1	20	-	-
	Dod07g0064	341	ProSitePatterns	HSF-type DNA-binding domain signature.	63	87	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Dod07g0064	341	PANTHER	HEAT STRESS TRANSCRIPTION FACTOR A-6B	8	331	-	-
	Dod07g0064	341	SMART	hsfneu3	20	113	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Dod07g0064	341	Pfam	HSF-type DNA-binding	24	113	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Dod07g0064	341	Gene3D	-	16	115	IPR036388	-
	Dod07g0064	341	SUPERFAMILY	"Winged helix" DNA-binding domain	19	113	IPR036390	-
	Dod07g0064	341	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	8	331	IPR027725	-
	Dod07g0064	341	Coils	Coil	141	161	-	-
	Dod07g0064	341	PRINTS	Heat shock factor (HSF) domain signature	62	74	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Dod07g0064	341	PRINTS	Heat shock factor (HSF) domain signature	24	47	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Dod07g0064	341	PRINTS	Heat shock factor (HSF) domain signature	75	87	IPR000232	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dod07g0064	Dod-Chr7	644313	647035	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dod07g0064	1	339	HSF	AT3G22830	57.682	4.83e-136	391

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Dod07g0064		HSF_DNA-bind	7e-32	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Dod07g0064	K09419		-	qsu:112016413	437.187