Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod07g0045 ATGCCCGGTGATCCCTTTTCTTTATCCACTACTTCCATCGGAGGGTTTGCTCAAGAGCAAAACACAAACACAAACCCTAACCCTAAACCTAATAATCCTCCTCCTCAAGTCCCCAAGAAGAAGAGAAACCTGCCAGGAACACCAGATCCAGATGCTGAGGTCATTGCTCTTTCTCCCAAGACCCTTATGGCCACCAACAGGTTCATATGTGAGATATGCAACAAAGGGTTCCAAAGAGACCAGAACCTTCAGCTTCACAGAAGGGGTCACAACCTTCCATGGAAGCTGAGGCAGAGGTCCAACAAGGAGGTTAGGAAGAAGGTGTACATCTGCCCTGAGAAGACCTGCGTCCACCACGACCCTTCAAGGGCATTGGGAGACCTCACAGGCATCAAGAAGCACTTCAGCAGGAAGCATGGCGAGAAGAAGTGGAAGTGTGACAAGTGCTCCAAGAAATACGCAGTCCAATCTGATTGGAAAGCTCACACCAAGACCTGTGGCACTAGAGAATACAAGTGTGACTGCGGCACCCTTTTCTCCAGGAAGGACAGCTTCATTACCCACAGAGCTTTCTGCGATGCCTTGGCTGAAGAGAGTGCTAGGCTCACATCAGTTGCCCCAACAAATCTGACTTTCAAGAATGAAGAGAGTGCTGTGATGAATAACGGCTCTCAGCAGCATGGTTTGGCACATGGACTGATTGCAACTGCTGAGCAGGGGCTTCAAAATGTAGCTGGAATTCCTCAATTTGGTCCTCATGGATATCGTCTAGATTTTAATGGAATGGAGCATAGACCAAGCTTGTCACTGTGGTTGAACCAAGGAGGGAACCAGCATCAAATCAATAATGCATCTCATGATGTGGGACCAAATTCTGGCCTCTATAATGTGTCCACATGTTCTTCTTCAGGTTTGCCTGAGATTGTGCAAATGGCACAAGCTACTAATAATGGTGCCTTAATTGGCTCTAATTCAATATTGTCCAATTTTGGGGTTGTGCCTGCTTCCATTTCCAATTCAACTAGTGCAAACCTTTCACTATCTTCACTACCTATTGGGAAAAGAGGAGAATTAGGTGGAACTTCAGATCATAACTTGGCATCTGTTTATAGTAGCTCCGAGGGTCAAAGTAAGCAATTAACAAAGCCACCTAATTCTTCACCAATGTCAGCCACTGCTCTTCTTCAGAAAGCAGCTCAGATGGGTTCCACAAGAAGCACCACCAACCCTTCAATTTTCAGTGGTAGTTTTGGGGTGATGACTTCATCTAATTCCTCCCAAACTACCACTCACAACAATAGCAATAACAATAATGCAAACCATGCTGGGAATTTCGCTTCAAGTACTAGCAGTGCAGCCATGCTGGGAAGCGATGCCAACTTCAGCTCATTGACGCATTCATCAAACAGTTTTGATCAGCTTGTGATGCAAACCGGTGCACAACATAGTGAGCCGGTGAAATTGAAGCTCCATCATGGTTCAAATGCTGTGGAACACAATTTGACAAGAGATTTTCTTGGGGTGAGTGGAGAAGGAGGTGCTGGCCCTCAATTCCTGCCCCAAGAGCTTGCAAAGTTTGCTTCCATAGGCTCACCAATTGGGTTGAGCCAATTCACAAGCAATCAGTGA 1629 0.4616 MPGDPFSLSTTSIGGFAQEQNTNTNPNPKPNNPPPQVPKKKRNLPGTPDPDAEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRSNKEVRKKVYICPEKTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHTKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESARLTSVAPTNLTFKNEESAVMNNGSQQHGLAHGLIATAEQGLQNVAGIPQFGPHGYRLDFNGMEHRPSLSLWLNQGGNQHQINNASHDVGPNSGLYNVSTCSSSGLPEIVQMAQATNNGALIGSNSILSNFGVVPASISNSTSANLSLSSLPIGKRGELGGTSDHNLASVYSSSEGQSKQLTKPPNSSPMSATALLQKAAQMGSTRSTTNPSIFSGSFGVMTSSNSSQTTTHNNSNNNNANHAGNFASSTSSAAMLGSDANFSSLTHSSNSFDQLVMQTGAQHSEPVKLKLHHGSNAVEHNLTRDFLGVSGEGGAGPQFLPQELAKFASIGSPIGLSQFTSNQ* 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod07g0045 542 MobiDBLite consensus disorder prediction 363 444 - -
Dod07g0045 542 SMART c2h2final6 109 139 IPR013087 -
Dod07g0045 542 SMART c2h2final6 68 90 IPR013087 -
Dod07g0045 542 SMART c2h2final6 144 164 IPR013087 -
Dod07g0045 542 ProSitePatterns Zinc finger C2H2 type domain signature. 70 90 IPR013087 -
Dod07g0045 542 Pfam Zinc-finger double-stranded RNA-binding 68 90 IPR022755 -
Dod07g0045 542 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 4 530 - -
Dod07g0045 542 Gene3D Classic Zinc Finger 46 117 - -
Dod07g0045 542 MobiDBLite consensus disorder prediction 1 51 - -
Dod07g0045 542 Gene3D Classic Zinc Finger 118 201 - -
Dod07g0045 542 MobiDBLite consensus disorder prediction 364 444 - -
Dod07g0045 542 MobiDBLite consensus disorder prediction 27 41 - -
Dod07g0045 542 PANTHER ZINC FINGER PROTEIN JACKDAW 4 530 IPR033243 GO:0003700
Dod07g0045 542 SUPERFAMILY beta-beta-alpha zinc fingers 67 164 IPR036236 -
Dod07g0045 542 MobiDBLite consensus disorder prediction 1 26 - -
Dod07g0045 542 ProSiteProfiles Zinc finger C2H2 type domain profile. 68 90 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod07g0045 Dod-Chr7 503525 506689 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod07g0045 1 262 IDZ Gene Family AT5G03150 64.894 2.39e-119 359
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dod07g0045 zf-C2H2_jaz 8.1e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod07g0045 K25870 - gmx:100811274 703.745