Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod07g0028 ATGATTGGGATCCAAATATTAGTGAAAGCTTCTATGGGTCTAGATTCATCTGAAATAACTGAGGAACTCCCAAGTGGACAACATGGGACTAGGAAAAGCCTTATCTTGGAGATACCTACCACAAGCACTCTTGAGGAAGCAAGAGAAGACTTTTTGAGGATAGACATGCCTCTAACTCCACCTCCAAGAAGAGTAAACTTTTCACCATGTCCAAGCCCTGGTTTCATCAGAATCAATGAGTCCCCCGGCTCCTCCTCGTCAAAAAATAGATCGACTATCAAGACACTACTTCCCAAACTCAGTCTGAAAATCCGGAACACAAGCTCACAGATTGAAAAGGCTGCATTCCTAGCACTTGAAGGTTCACCAAAAGTGGCACAAAAAAAGCCTCTTCTTCTAAGGACACTATCACTTACAAAGTTGATCACACCTAGAGGGAAGAACACAACATCCTTGCCTATAACACCAATTGCTCATTCAAATCCAGAGTCTACACATGGAGGGAATGCAACTTATCTAGCAACACCTATTGGAAAAGGAACTCAATTACCAATTCATCGTTCCCGTTCAGTTCCTGCACTTAACAAAGAAGGGAACACACCTGTAGGTGGCATGTTTCGTGTAATTCCGACCACGCCACGATTGGATGAGAAAATTGCCACAACCACATCTATGACATCTCCTCCTGATGATACTGTTAAAAATGAGGATGGCAGTGAAGATATTCCTGCAGAAGAAGCTGTTTGTAGAATTTGTATGATTGAATTGGGAGAAGGTGCTGATACTCTTAAATTGGAGTGTAGCTGCAAAGGTGAACTTTCACTGGCGCACCAAGAATGTGCAGTTAAATGGTTTGGCATTAAAGGAAATAGAACATGTGATGTGTGCAAGCAAGAAGTAAAGAACCTACCTGTTACTCTTTTGCGAGTTCAAACTGCTCGGGCACATGGCTTGCAACATGCTGAGATTTCTCAATCCAGGGTTTGGCAGGATGCTCCCATTCTTGTTGTTGTCAACATGCTGGCTTACTTTTGTTTTCTTGAGTAG 1047 0.426 MIGIQILVKASMGLDSSEITEELPSGQHGTRKSLILEIPTTSTLEEAREDFLRIDMPLTPPPRRVNFSPCPSPGFIRINESPGSSSSKNRSTIKTLLPKLSLKIRNTSSQIEKAAFLALEGSPKVAQKKPLLLRTLSLTKLITPRGKNTTSLPITPIAHSNPESTHGGNATYLATPIGKGTQLPIHRSRSVPALNKEGNTPVGGMFRVIPTTPRLDEKIATTTSMTSPPDDTVKNEDGSEDIPAEEAVCRICMIELGEGADTLKLECSCKGELSLAHQECAVKWFGIKGNRTCDVCKQEVKNLPVTLLRVQTARAHGLQHAEISQSRVWQDAPILVVVNMLAYFCFLE* 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod07g0028 348 PANTHER OS02G0165000 PROTEIN 15 348 - -
Dod07g0028 348 SUPERFAMILY RING/U-box 245 300 - -
Dod07g0028 348 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 15 348 - -
Dod07g0028 348 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 234 305 IPR013083 -
Dod07g0028 348 CDD RING_CH-C4HC3_MARCH 249 297 - -
Dod07g0028 348 SMART ringv_2 248 297 IPR011016 GO:0008270
Dod07g0028 348 Pfam RING-variant domain 249 296 IPR011016 GO:0008270
Dod07g0028 348 ProSiteProfiles Zinc finger RING-CH-type profile. 241 303 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod07g0028 Dod-Chr7 294479 298642 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod07g0028 246 303 C3H Transcription Factor Family AT2G37950 42.373 1.10e-11 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod07g0028 - - gmx:100787963 482.641