Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod07g0017 ATGATTACATTTATGGATTCAAAGGAGAAAACAAGAGAGGTGGGGGAGAAGTGTTTGGACCCTCAGCTATGGCATGCCTGTGCTGGTGGTATGGTGCAGATGCCACAGGTGAAAACTAAGGTCTATTACTTCCCTCAGGGCCATGCTGAACATGCATGTGGTCGAGTGAACTTTAGGACCTGCCCCAAGGTTCCACCTATGGTTCCTTGTAGGGTAGCTGCAGTCAAGTACATGGCTGATCCTGAGACTGATGAGGTCTATGCCAAAATTAGGCTTATTCCTCTTAGTAGCAGTGATGCTGATTATGAAACTGGTGTTGTTGGAGGCATCAATGAGCCTGAAACTCAGGATAAGCCTGCTTCATTTGCTAAGACCTTGACACAATCTGATGCCAACAATGGTGGAGGGTTTTCTGTTCCTAGATATTGTGCAGAAACGATTTTCCCTCGGTTGGACTATTCGGCTGACCCTCCTGTCCAGAACATCCTTGCCAAGGATGTTCATGGCGAAACATGGAAATTCAGGCACATATATAGGGGCACGCCAAGGCGGCACCTGTTGACCACTGGTTGGAGTACTTTTGTTAATCACAAGAAGCTTGTTGCTGGGGACTCAATTGTGTTCTTGAGAGCAGAAAATGGGGATCTGTGTGTTGGAATTCGGAGGGCGAAGAAGGGTCTTGGTGGCGGACCTGAGGCTTCTTCAGGTTGGAATCCTGCAGGTGGGAATTGTCCTGTGCCTTATGGTGGATTTCCATCCTTTCTGAGGGAGGATGATATCAGACTCTTGAGAAATGGTAGCAGCAATGGATTGGACCCGAGTGCGAGAATGATGGGAAGGGGAAAAGTGAGGCCGGAAGCAGTTATTGAAGCCGCAACTCATGCTGCCAATAAGCAACCTTTTGAGGTTATATACTACCCTCGCGCAAGTACTCCTGAATTCTGCGTGAAGGCCTCTTTGGTTGAAGCAGCGCTGCAGATTAGGTGGTGTTCTGGAATAAGGTTCAAGATGGCCTTTGAAACAGAGGACTCATCACGGATTAGTTGGTTTATGGGGACCATATCTTCAGTTCAGGTTGCTGATTCCCTTGACTGGCCTAACTCACCTTGGAGGCTTCTCCAGGTTACATGGGACGAACCGGATTTACTTCAAAACGTGAGAAGGGTGAGCCCTTGGCTTGTTGAATTGGTATCAAACATGCCTGCCCTCCATCTTTCCCCTTTCTCGCCACCACGGAAGAAACTGAGATTGCCCCAACACCCTGATTTTCCTCTTGACGGCCAGATTCCTGTCCCATCATTTCCCAGCAACCTTCTTGGTCAGAGTAACCCATATGGTTATCTACACGAAAGTACTCCTGCTGGCATGCAGGGAGCCAGGCATGCTCATTATGGTCTATCCTTATCAGATCTCCACCTCAGTAAACTGCAGTCAGGTCTATATCCTGCCGGTTTCCCACCACTTGATCACGCTGCTGCACCAATGAGGGTCTCAAACAACCTAATATTGCAAAAGCCCAGCACGAGTGAGAATGTCTCGTGTCTATTATCTATGGCAAGTTCTCCTCAGTCTTTGAAGAAACCAGATGATGGGAAGACACCACAGCTTGTGCTTTTTGGCCAAAAAATTCTCACAGAGCAGCAGCTCTCGCGCAGCAGCTCTGGGGACACAGTCTCCCCAGTTCTCACTGGAAATAGTTCATCAGATGGAAATGCTGATAAAGTGGCCAATTTTTCCGATGGTTCTGGATCTGCTCTTCATCAACAAGGCCCACCGGAACGCTCCTCCTGTGAGAGATTCCAGTGGTATAGGGATCACCGCCAAGAAACCGAGGCTGGTTTGGAGACTGGTCACTGTAAAGTTTTCATGGAATCAGAAGATGTAGGTCGGACTTTGGACCTCTCGTTGCTTGGTTCTTATGATGAACTGTACAGAAAGCTGGCAGACATGTTTGGCATTGAAAATTCTGAGATGCTAAGTCATGTGCTCTACCGCAATATAACTGGGGCAGTTAAACACATCGGAGAAGAACCATTCAGTGATTTCTCAAGAACAGCCAGGAGGTTGACTATTCTAATGGATTCCAGCAGTGACAATGTAGGAGTGTAG 2109 0.4784 MITFMDSKEKTREVGEKCLDPQLWHACAGGMVQMPQVKTKVYYFPQGHAEHACGRVNFRTCPKVPPMVPCRVAAVKYMADPETDEVYAKIRLIPLSSSDADYETGVVGGINEPETQDKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSADPPVQNILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFLRAENGDLCVGIRRAKKGLGGGPEASSGWNPAGGNCPVPYGGFPSFLREDDIRLLRNGSSNGLDPSARMMGRGKVRPEAVIEAATHAANKQPFEVIYYPRASTPEFCVKASLVEAALQIRWCSGIRFKMAFETEDSSRISWFMGTISSVQVADSLDWPNSPWRLLQVTWDEPDLLQNVRRVSPWLVELVSNMPALHLSPFSPPRKKLRLPQHPDFPLDGQIPVPSFPSNLLGQSNPYGYLHESTPAGMQGARHAHYGLSLSDLHLSKLQSGLYPAGFPPLDHAAAPMRVSNNLILQKPSTSENVSCLLSMASSPQSLKKPDDGKTPQLVLFGQKILTEQQLSRSSSGDTVSPVLTGNSSSDGNADKVANFSDGSGSALHQQGPPERSSCERFQWYRDHRQETEAGLETGHCKVFMESEDVGRTLDLSLLGSYDELYRKLADMFGIENSEMLSHVLYRNITGAVKHIGEEPFSDFSRTARRLTILMDSSSDNVGV* 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod07g0017 702 SUPERFAMILY DNA-binding pseudobarrel domain 116 223 IPR015300 -
Dod07g0017 702 CDD B3_DNA 121 222 IPR003340 GO:0003677
Dod07g0017 702 ProSiteProfiles B3 DNA-binding domain profile. 122 224 IPR003340 GO:0003677
Dod07g0017 702 ProSiteProfiles PB1 domain profile. 616 699 IPR000270 GO:0005515
Dod07g0017 702 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 6 693 IPR044835 GO:0003677|GO:0006355|GO:0009725
Dod07g0017 702 Pfam Auxin response factor 291 374 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Dod07g0017 702 SMART B3_2 122 224 IPR003340 GO:0003677
Dod07g0017 702 MobiDBLite consensus disorder prediction 548 596 - -
Dod07g0017 702 Pfam B3 DNA binding domain 122 223 IPR003340 GO:0003677
Dod07g0017 702 Gene3D - 120 224 IPR015300 -
Dod07g0017 702 Gene3D - 614 700 - -
Dod07g0017 702 MobiDBLite consensus disorder prediction 548 595 - -
Dod07g0017 702 PANTHER AUXIN RESPONSE FACTOR 6 693 - -
Dod07g0017 702 Gene3D - 328 402 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod07g0017 Dod-Chr7 189035 193177 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod07g0017 16 702 B3 DNA Binding Superfamily AT4G30080 59.222 0.0 769
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Dod07g0017 B3 3.7e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod07g0017 - - gmx:100796522 1206.05