Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod07g0011 ATGTCTACCACTGCAGCAGCTTCTCTGGCACTTCCGACCCTAACACTCCGAACCCGACAACCTCTTTCTTCACCACCACAATGCTTCTCTCCCCTCTTCTTCAACACTAACCCCAAACCCACTTCCATTTCCGCTACTTTCCTTCGTTTTCGTCCAACGTTGTTGTCGTCACGGTTCGTGTCCAATGTTGCGCTGTCCTCGGAGTTCGACCAGGACGAGGAGATACTTAGCGAAGGAGACGAGCGTAGCTTCTCACCAGAAGCCAAGCTCTTCGTTGGGAACCTTCCTTTCAGCGTTGACAGTGCACAGCTCGCTGAGCTCTTCGAAAGTGCTGGAACCGTTGAAGTCGTTGAGGTGATTTATGATAAGACAACTGGAAGAAGTAGGGGTTTTGGTTTTGTGACCATGTCGTCGGCCGAGGAAGCTGAAGCAGCAACCCAACAATTCAATGGCTATGAACTAGATGGAAGGCCATTGAGAGTGAATTGTGGACCACCTCCTGCTCGGAATGAGAGTTCACGTTTCAGATCTCCTGGCAGAGGTGGTTTTTCTTCAGATAATGGAAACCGTGTTCATGTAGGTAATCTTGCATGGGGTGTTGACCACTTAGCACTTGAGTCATTATTCCGTGAACAAGGAAAGGTTTTGGAAGCCAAGGTAATCTATGACAGGGAAAGTGGAAGATCAAAGGGCTTTGGATTTGTGACTTATAGTAGCCCTGAAGAGGTTAACAGTGCTATTGAGTCCTTGGATGGTGTGGATTTGAATGGCAGAGCTATTAGAGTTTCATTAGCAGACTCTAAGCCCAAGCGCCAATTTTGA 822 0.4793 MSTTAAASLALPTLTLRTRQPLSSPPQCFSPLFFNTNPKPTSISATFLRFRPTLLSSRFVSNVALSSEFDQDEEILSEGDERSFSPEAKLFVGNLPFSVDSAQLAELFESAGTVEVVEVIYDKTTGRSRGFGFVTMSSAEEAEAATQQFNGYELDGRPLRVNCGPPPARNESSRFRSPGRGGFSSDNGNRVHVGNLAWGVDHLALESLFREQGKVLEAKVIYDRESGRSKGFGFVTYSSPEEVNSAIESLDGVDLNGRAIRVSLADSKPKRQF* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod07g0011 273 Gene3D - 186 273 IPR012677 -
Dod07g0011 273 Gene3D - 63 185 IPR012677 -
Dod07g0011 273 SUPERFAMILY RNA-binding domain, RBD 185 272 IPR035979 GO:0003676
Dod07g0011 273 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 90 160 IPR000504 GO:0003723
Dod07g0011 273 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 192 261 IPR000504 GO:0003723
Dod07g0011 273 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 88 166 IPR000504 GO:0003723
Dod07g0011 273 PANTHER 29 KDA RIBONUCLEOPROTEIN, CHLOROPLASTIC 5 273 - -
Dod07g0011 273 PANTHER OS02G0815200 PROTEIN 5 273 - -
Dod07g0011 273 MobiDBLite consensus disorder prediction 166 186 - -
Dod07g0011 273 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 189 267 IPR000504 GO:0003723
Dod07g0011 273 CDD RRM_HP0827_like 89 162 - -
Dod07g0011 273 SUPERFAMILY RNA-binding domain, RBD 84 188 IPR035979 GO:0003676
Dod07g0011 273 SMART rrm1_1 190 263 IPR000504 GO:0003723
Dod07g0011 273 SMART rrm1_1 89 162 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod07g0011 Dod-Chr7 116843 119236 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod07g0011 90 272 Eukaryotic Initiation Factors Gene Family AT4G34110 33.333 4.81e-20 87.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod07g0011 - - gmx:100786275 371.703