Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod07g0002 ATGGATCAGGAAGAGTATTTGCGGAAGTGTTCCAATATGAAATGCCAAAGGGTTCAGGTGGATGAATCATTTGTACCTGCTCTTCGAGATGAAGTAATGGAAGTTGACCATTCACTTGCAGAACCTAGAAATGATCATGTTTCAGTGGATGGTGTTTTGGATATTCATACAACTTTGAATGGAAAGGATGACTTGGAGCTGGAGGTCCTTGATGGATTTTTGGATGATGTTGAAATTGATGACCTTGAAGGAACTGATGGTTTCTCTGGTGCATGCCAAGAGTTCATTTTGGATTTTGAATTTGATAACAAAGCTGAGGTACTAGGCTCTGGTCCTTGTGAAGGTTCACTTTTTCAAAACTCAACTTCAGAAAGTCATTCTTCAGGATTGAGTGGAAGCAGCATTGTTGGCTGGGTATCAGAATCTACAAAAGTACCCATTGCACAATCTGAAAGCAAAAATAATTCTCTTGATGAGACAGTAACCTATGAATCACATGGTGCCTTCAGGAACAATCCAAGTCAACCATCAAATGAAGATTGCATGTACGACATTTCACTTGATATGCCACATCTACGTCAGTTGGATAATGGCCAAACTGTAGCTGGGGGCATATTGTATTGTAAGAAGGAAAAGGTCTCTGATGAAAAATGCCAACCTGCTACTCTTAGAGAAAAGAGATTCCGAAAGCCTACTCAGAGGTATATTGAAGAATTTTCAAATTCTAAGCCAAAGGAGGAAAAGGTACCAACTGCCGGTACAAAACATAAACATTTAAGTGTGTCCTCATGTAATGAACTTCATATTAAAATCAAAGCATTGAGAAAGATTCCAGGTGAGAAGTCTAGTAAGGGAAATAGTAGTATGACACTTCCGGAGTTGAAAGTTCGCAAGGGGCGTCCAAAGAAAGAGAAACTTGAGTATGATGAGGAGCCATTTCCGTCGGAGTCCGAGGATGAATGTTTGACACCAAAAAAATCTAGAAGGAAAGATCGGAGAAAGCATCAAAGGATGTGGACTCTCTCTGAAGTGATTAAGTTGGTAGATGGCATATCTGAATATGGAGTTGGTAGATGGACTCATATAAAGAGGTTTTTGTTTTCTTCTTCAAGCTACCGAACGCCCATAGATCTCAGGGACAAGTGGCGTAATCTGTTAAGGGCCAGTTCTGCACAGAAAATTAACAAGAAAGAGGTTGAGCAAAATGATGATCTTGCTCTCCGTCCCTTACCATTTAATGTGGCATGCCGGGTGCGCGAATTGGCTAAAATTCACCCTTATCCAAGGCAACGTGGCTCAAAGAAATCACGTGTTAGCCAATTTGGTTCTTCTGCTGCTGTTGGTCAAAGTAAAGCATCTCCTCTCATTAGTGTAAGCAAGAGAAATGCTCGAAGGAAGAAGCGTACTTAA 1410 0.4071 MDQEEYLRKCSNMKCQRVQVDESFVPALRDEVMEVDHSLAEPRNDHVSVDGVLDIHTTLNGKDDLELEVLDGFLDDVEIDDLEGTDGFSGACQEFILDFEFDNKAEVLGSGPCEGSLFQNSTSESHSSGLSGSSIVGWVSESTKVPIAQSESKNNSLDETVTYESHGAFRNNPSQPSNEDCMYDISLDMPHLRQLDNGQTVAGGILYCKKEKVSDEKCQPATLREKRFRKPTQRYIEEFSNSKPKEEKVPTAGTKHKHLSVSSCNELHIKIKALRKIPGEKSSKGNSSMTLPELKVRKGRPKKEKLEYDEEPFPSESEDECLTPKKSRRKDRRKHQRMWTLSEVIKLVDGISEYGVGRWTHIKRFLFSSSSYRTPIDLRDKWRNLLRASSAQKINKKEVEQNDDLALRPLPFNVACRVRELAKIHPYPRQRGSKKSRVSQFGSSAAVGQSKASPLISVSKRNARRKKRT* 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod07g0002 469 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 331 390 IPR017930 -
Dod07g0002 469 MobiDBLite consensus disorder prediction 295 310 - -
Dod07g0002 469 ProSiteProfiles Myb-like domain profile. 331 386 IPR001005 -
Dod07g0002 469 PANTHER TRF-LIKE 8 8 467 - -
Dod07g0002 469 SUPERFAMILY Homeodomain-like 333 388 IPR009057 -
Dod07g0002 469 MobiDBLite consensus disorder prediction 238 259 - -
Dod07g0002 469 MobiDBLite consensus disorder prediction 238 254 - -
Dod07g0002 469 MobiDBLite consensus disorder prediction 427 469 - -
Dod07g0002 469 SMART sant 335 388 IPR001005 -
Dod07g0002 469 MobiDBLite consensus disorder prediction 433 457 - -
Dod07g0002 469 CDD SANT_TRF 337 387 - -
Dod07g0002 469 Pfam Myb-like DNA-binding domain 339 386 IPR001005 -
Dod07g0002 469 Gene3D - 325 438 - -
Dod07g0002 469 MobiDBLite consensus disorder prediction 275 335 - -
Dod07g0002 469 PANTHER MYB-LIKE DNA-BINDING DOMAIN CONTAINING PROTEIN, EXPRESSED 8 467 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod07g0002 Dod-Chr7 19149 23856 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Dod07g0002 Myb_DNA-binding 1.5e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod07g0002 - - gmx:100810255 666.381