Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g2828 ATGAAGCTCACCGTCAAGACTCTTAAAGGCAGCCATTTCGAAATCAGGGTTCAGCCCTCCGACACTATTATGGCTGTCAAGAAGAATATTGAAGATGTACAAGGCAAAGATAATTACCCATGTGGACAACAATTGCTGATTCACAATGGCAAGGTTTTGAAAGATGAAACTACGTTAGCAGAGAACAAGGTCTCCGAGGATGGGTTTCTTGTTGTCATGCTTAGCAAGAGTAAAACATTGGGTTCTGCGGGGGTTTCATCTTCCCAGCAGCCTGCCAGCAATCCACCTACAACTGTGTCAACATCAAGTTCCACACCTGCTCCTGACCCTCCAGTACAACCTCAGCCTACAAACAATAGCACATCTGGCATGGATGTCACAACTACAAATACCGATGTGTCTGTGGATACTTATGGTCAGGCTGCTTCAAATTTAGTTGCTGGTAGTAATCTGGAGCAGACTATCCAACAAATTATGGACATGGGCGGTGGTAACTGGGACCGAGATACAGTTACTCGTGCTCTTCGGGCAGCGTACAATAACCCAGAGCGTGCTATAGATTACTTGTACTCTGGAATCCCTGAAGCAGCAGAAGTTGCTGTACCAGTTCCTAACTTCCCTGGTAGTCAGACAACTGAAACAGCTGGGGTCACTGCAGGAGCAGTTCCTGGAGCACCTAACTCTTCTCCCTTAAATATGTTTCCCCAGGAGACTATTTCTGGTACTGGTACTGGACTTGGATCTCTTGACTTCCTCAGAAACAATGCCCAGTTTCAAGCGTTGCGTACTAATGGTGCAATCAAATCCACAAATTTTACAGCCTGTGCTTCAGGAACTTGGAAAGCAGAATCCCAATCTTTTAAGACTGATCCAAGAGCATCATGCTGA 888 0.4572 MKLTVKTLKGSHFEIRVQPSDTIMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLAENKVSEDGFLVVMLSKSKTLGSAGVSSSQQPASNPPTTVSTSSSTPAPDPPVQPQPTNNSTSGMDVTTTNTDVSVDTYGQAASNLVAGSNLEQTIQQIMDMGGGNWDRDTVTRALRAAYNNPERAIDYLYSGIPEAAEVAVPVPNFPGSQTTETAGVTAGAVPGAPNSSPLNMFPQETISGTGTGLGSLDFLRNNAQFQALRTNGAIKSTNFTACASGTWKAESQSFKTDPRASC* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g2828 295 SMART uba_6 151 191 IPR015940 -
Dod06g2828 295 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Dod06g2828 295 PANTHER UBIQUITIN RECEPTOR RAD23A-RELATED 1 263 - -
Dod06g2828 295 SMART ubq_7 1 75 IPR000626 GO:0005515
Dod06g2828 295 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 149 192 IPR015940 -
Dod06g2828 295 TIGRFAM rad23: UV excision repair protein Rad23 1 263 IPR004806 GO:0006289
Dod06g2828 295 SUPERFAMILY Ubiquitin-like 1 89 IPR029071 -
Dod06g2828 295 MobiDBLite consensus disorder prediction 116 130 - -
Dod06g2828 295 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 263 - -
Dod06g2828 295 MobiDBLite consensus disorder prediction 81 130 - -
Dod06g2828 295 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Dod06g2828 295 SUPERFAMILY UBA-like 148 199 IPR009060 GO:0005515
Dod06g2828 295 MobiDBLite consensus disorder prediction 81 106 - -
Dod06g2828 295 CDD UBA1_Rad23_plant 145 194 - -
Dod06g2828 295 Pfam UBA/TS-N domain 151 189 IPR015940 -
Dod06g2828 295 Gene3D - 1 80 - -
Dod06g2828 295 CDD Ubl_Rad23 1 74 - -
Dod06g2828 295 Gene3D - 144 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g2828 Dod-Chr6 59648295 59653026 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g2828 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 40.541 1.38e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g2828 K10839 - gmx:100819019 380.948