Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g2765 ATGCCTCCGAGAACGGTGAAGCGAGGCGCTGCGGCGGGCGGTGCAAGAAGGGGTGGAAGAGGGGGCAGAGTTTCCTCGAAGGCAGCGCAGAATCCGAATCAGAATCAGCAGCAAGAGCAGCTGAACGCTGAGGCTGGTTCGGAAGAAGTGGTGAAGCTCGAGGAGAAGGCGGTTATGGAGGAAGCGCCTAAAGCCGAAGAGAACCCCGTTGTGGAAGAGAAACCCGTTGTTGTCGAGGAGGAGAAACCCGTTGTTGAGGAGAAATCCATTGATATGAACCAAGTGGCTCCTGAGGCTGAAGAAGAAGCAGCAGCAACAACAACAACCAGCATTTCCAATGGGTCTGCTATGGCGAAAAACGAGGAAGAGGACGTTAAGGAGTCTATAGATGAATATGAGAAAGGTGAACGCTTGGATTTGGAGGATAATTATCCTGAGTATGAACCTGAGGAGTACGGTGAACAAGATGAGGTTCATGAGGTGGTTGATGAAATAGAGGAAGAAGCTGAAGATAATGCTGGTGAAGAAGAGGATGATACGGGTGAGGAAGAAGTTGAAGATGTTCATGATGAAATTGAGGGTGAAGAGGATGATGAGCATGCTGGGGAGGAGCACGATCTTGCAGGGATGGTTGATGTGGAAGAGGAACATCGGGAAGTTGTAAAGGAGAGGAGAAAGCGGAAAGAATTTGAAGTATTTGTTGGAGGCCTAGACAAGGATGCTACTGAAGATGATCTGAGGAAGGTTTTCAGTGAAGTTGGGGTGGTCACTGAAGTCAGGCTGATGATGAACCCCCAGACTAAAAAGAACAAGGGATTTGCATTCTTGCGCTTTGAAACTGTCGAACAAGCAAAGCGAGCTGTAGCAGAGCTTAAAAATCCAGTGATTAATAGCAAACAATGTGGTGTTACTCCAAGTCAGGACAGTGATACTCTCTATTTGGGAAACATATGCAAGACATGGACGAAGGAAGCTTTGAAGGAGAAGTTGAAACATTATGGAGTTACAAATGTTGAGGATTTGACTTTGGTAGAAGATAGTAATGATGAAGGAAAGAACCGTGGATTTGCTTTTTTGGAATTTTCTTCTCGCTCAGATGCCATGGATGCATTTAAGAGGCTCCAGAAGAGAGATGTTGTTTTTGGAGTTGATAAGCCTGCAAAGGTTTCCTTTGCAGATTCCTTTATTGACCCGGGTGACGAAATTATGGCACAGGTCAAAACTGTGTTTATTGATGCACTCTCGCCTTCATGGGATGAAGATTATGTTCGGAATCTTCTCAAGAAATATGGGGAGATTGAAAAGATTGAACTCGCCAGGAATATGCCAGCTGCCCGCAGGAAGGACTATGGATTTGTTACATTTGGAACACATGATGCTGCTGTGAGATGTGCAGAAAGTATTACTGGTACAGAGTTGGGTGAAGGTGACAAGAAGGCAAAGGTCAGGGCTAGGCTGTCAAGACCACTTCAGAGAGGCCGTGGAAAGCATGTGAGTCGTGGGGACTACCGTTCTAGCCGTGGATCTGGAACAATGGCAAGACCTTCATGGAGCCGACCTGCACCACGTAGTTTTCCACCCCGTGGGGTAAGAGGAATTGGAAGTCGTGTTCCACCAGTCAGGCCAGTTAGTATGAGAGAGAGACGTCCTATCATGTCTGTGCCAGTGAGAAATAGGCCAGTGGCTCCTCCTCCAGCTAGATCCTATGATAGGAGACAGGCTGTTCCTGCATATCCCAAAATTAGCACAAAGAGAGATTATGGTCGACGTGAAGATTTACCGCCTCCAAGAAGTAGAGTTCCTGCAGATTATGGCTCAAGGGTGGCTGCTGAAAGACGCCCATCTTACAGGGATTATCCTCCTGCCCGTGGTGCTGGCTACTCAGATCTTCCGAGGAGTACATCTCGTGCTGCACCAAGGAGAGGTTATGCGGATGACGGTTATGGCCAAAGATTTGAGAGGCCTCCTCCTCCACCTCCTCCTCCCCATATAAGTTACCGTGAAGGGCGCCCCCGTGACTATGACGCTTTGTCTGGCTCAAAACGTTCTTATGCTGCCATTGATGATGTTCCTCCACGATATGCGGATACTGGTGCTCGGCAATCTAGAGCTCGATTGGACTATGAGTATGGTGGTAGTGCTTCGCAGTATGGAGATGCTTATGGGGACAGGCTTGGAAGATCTAGTCTGGGGTATGGTGGTAGCAGCAGAAGTTCTATTTCTAGTCAAGATTCCCACGGGATGTATAGCAGTCGACAGGGCATGAGTTATGGCGGAGGTTCATTTGGTGGTAGTGATGTTGGTGGTATGTACTCATCAAGTTATGGTGGTGATTACATTTCTCGTGGAAGTGATGTTGGTGGCAGCTCATATTCAACTATGTATTCTGGCAGGGGTGTGGGTGGTGGTAGCAGTTACATGGGTGGTAGTGGATCTGGGTCTTATTATTGA 2451 0.4778 MPPRTVKRGAAAGGARRGGRGGRVSSKAAQNPNQNQQQEQLNAEAGSEEVVKLEEKAVMEEAPKAEENPVVEEKPVVVEEEKPVVEEKSIDMNQVAPEAEEEAAATTTTSISNGSAMAKNEEEDVKESIDEYEKGERLDLEDNYPEYEPEEYGEQDEVHEVVDEIEEEAEDNAGEEEDDTGEEEVEDVHDEIEGEEDDEHAGEEHDLAGMVDVEEEHREVVKERRKRKEFEVFVGGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTKKNKGFAFLRFETVEQAKRAVAELKNPVINSKQCGVTPSQDSDTLYLGNICKTWTKEALKEKLKHYGVTNVEDLTLVEDSNDEGKNRGFAFLEFSSRSDAMDAFKRLQKRDVVFGVDKPAKVSFADSFIDPGDEIMAQVKTVFIDALSPSWDEDYVRNLLKKYGEIEKIELARNMPAARRKDYGFVTFGTHDAAVRCAESITGTELGEGDKKAKVRARLSRPLQRGRGKHVSRGDYRSSRGSGTMARPSWSRPAPRSFPPRGVRGIGSRVPPVRPVSMRERRPIMSVPVRNRPVAPPPARSYDRRQAVPAYPKISTKRDYGRREDLPPPRSRVPADYGSRVAAERRPSYRDYPPARGAGYSDLPRSTSRAAPRRGYADDGYGQRFERPPPPPPPPHISYREGRPRDYDALSGSKRSYAAIDDVPPRYADTGARQSRARLDYEYGGSASQYGDAYGDRLGRSSLGYGGSSRSSISSQDSHGMYSSRQGMSYGGGSFGGSDVGGMYSSSYGGDYISRGSDVGGSSYSTMYSGRGVGGGSSYMGGSGSGSYY* 817
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g2765 816 MobiDBLite consensus disorder prediction 1 48 - -
Dod06g2765 816 SMART rrm1_1 311 390 IPR000504 GO:0003723
Dod06g2765 816 SMART rrm1_1 231 304 IPR000504 GO:0003723
Dod06g2765 816 SMART rrm1_1 408 483 IPR000504 GO:0003723
Dod06g2765 816 CDD RRM_SF 312 379 - -
Dod06g2765 816 MobiDBLite consensus disorder prediction 103 117 - -
Dod06g2765 816 CDD RRM_SF 232 303 - -
Dod06g2765 816 MobiDBLite consensus disorder prediction 143 202 - -
Dod06g2765 816 Gene3D - 311 393 IPR012677 -
Dod06g2765 816 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 407 489 IPR000504 GO:0003723
Dod06g2765 816 CDD RRM_SF 409 483 - -
Dod06g2765 816 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 230 308 IPR000504 GO:0003723
Dod06g2765 816 SUPERFAMILY RNA-binding domain, RBD 402 510 IPR035979 GO:0003676
Dod06g2765 816 MobiDBLite consensus disorder prediction 119 142 - -
Dod06g2765 816 Coils Coil 118 138 - -
Dod06g2765 816 MobiDBLite consensus disorder prediction 26 44 - -
Dod06g2765 816 MobiDBLite consensus disorder prediction 87 204 - -
Dod06g2765 816 Gene3D - 398 515 IPR012677 -
Dod06g2765 816 SUPERFAMILY RNA-binding domain, RBD 231 376 IPR035979 GO:0003676
Dod06g2765 816 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 816 - -
Dod06g2765 816 Gene3D - 146 310 IPR012677 -
Dod06g2765 816 PANTHER RNA RECOGNITION MOTIF 1 816 - -
Dod06g2765 816 MobiDBLite consensus disorder prediction 583 597 - -
Dod06g2765 816 MobiDBLite consensus disorder prediction 488 677 - -
Dod06g2765 816 MobiDBLite consensus disorder prediction 732 752 - -
Dod06g2765 816 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 409 474 IPR000504 GO:0003723
Dod06g2765 816 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 312 378 IPR000504 GO:0003723
Dod06g2765 816 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 232 300 IPR000504 GO:0003723
Dod06g2765 816 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 310 394 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g2765 Dod-Chr6 58874808 58879376 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g2765 225 488 Eukaryotic Initiation Factors Gene Family AT1G49760 24.415 1.11e-16 82.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g2765 - - gmx:100779340 1039.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod06g2765 06 58874808 58879376 Dod06g2765 06 58874808 58879376 ECH