Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g2754 ATGGGAAGGGCTCCTTGTTGTGAGAAAGTGGGGTTGAAGAGAGGAAAGTGGACAGCAGAGGAAGATGAGCTCTTAACAAAGTATATTCAGGCCAATGGGGAAGGTTCATGGAGGTCATTGCCCAAGAATGCAGGACTACTAAGGTGTGGGAAGAGTTGCAGACTAAGGTGGATTAACTATTTGAGAGCCGACCTCAAAAGAGGGAACATTTCAGCTGAAGAGGAAGATCTCATTGTGAAGTTGCATACTAGTTTTGGCAACAGGTGGTCTTTGATAGCAAGTCACTTGCCAGGAAGAACAGACAACGAGATAAAGAACTACTGGAATTCTCACTTAAGCAGGAAAATCTACAGCTTCCGGATAGAAACTAACATGGACACCACCCTACCAGGGCTCACCGATTCACCCAAAGTTGCTATTCCTCCAGAGCCAAAACTCACCGATACACCCAAAGTTGCTATTCCTCCAAAGCCAAAACCAAGACGTGGAAGAACAAGCCGTTGGGCCATGAAGAAGAACAAAAGCTACATCCAAAAGGGTAACCGGAAACCAAAACAAATCGCCCCTCATCAGGACAATAAAGAAGTTGTAGTTCCACCACCACCATCTTCACTAGAGAGCGAGGTTAATTTATGTAGCACCATAGAGGATTTCTTGGTATTAGATTTGGACGCTAATAATAATAACATGGTGGGGAAAGAAGAAGAACCAAATTCCAATGCCAATAAGGACAAGGAGGGGTTGGAGTTGGGAGTACAATGTTGCCCAATGTATGAACAAGAAAGCAATGACACGTTACTAGGACCCTATGAATATGATGACCAAGCAGGTGGCGTTATTAATGTTGGTGGCGGGGCTTTGAGTTTATTTGCTGACATGGTGGACAGCTTCATGCTGGAAGAGTGTGGAGTTTTGACCTCAAGTGAAGAAAGTGATTGCAATAATAACAATAGTAGTAGTAGTATTGTGGGTAAGGAAAATGAACCTAAAAAAATGGCTATGAGTAGTGAGGACCAAGGAGAGAGTAGCTTGTGTGAATAG 1041 0.4361 MGRAPCCEKVGLKRGKWTAEEDELLTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNISAEEEDLIVKLHTSFGNRWSLIASHLPGRTDNEIKNYWNSHLSRKIYSFRIETNMDTTLPGLTDSPKVAIPPEPKLTDTPKVAIPPKPKPRRGRTSRWAMKKNKSYIQKGNRKPKQIAPHQDNKEVVVPPPPSSLESEVNLCSTIEDFLVLDLDANNNNMVGKEEEPNSNANKDKEGLELGVQCCPMYEQESNDTLLGPYEYDDQAGGVINVGGGALSLFADMVDSFMLEECGVLTSSEESDCNNNNSSSSIVGKENEPKKMAMSSEDQGESSLCE* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g2754 346 Gene3D - 71 116 - -
Dod06g2754 346 PANTHER MYB TRANSCRIPTION FACTOR 2 305 - -
Dod06g2754 346 CDD SANT 16 61 IPR001005 -
Dod06g2754 346 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Dod06g2754 346 SMART sant 13 63 IPR001005 -
Dod06g2754 346 SMART sant 66 114 IPR001005 -
Dod06g2754 346 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Dod06g2754 346 MobiDBLite consensus disorder prediction 308 325 - -
Dod06g2754 346 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Dod06g2754 346 Gene3D - 14 66 - -
Dod06g2754 346 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Dod06g2754 346 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Dod06g2754 346 MobiDBLite consensus disorder prediction 128 202 - -
Dod06g2754 346 CDD SANT 71 112 IPR001005 -
Dod06g2754 346 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Dod06g2754 346 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Dod06g2754 346 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 2 305 - -
Dod06g2754 346 MobiDBLite consensus disorder prediction 308 346 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g2754 Dod-Chr6 58714267 58719708 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g2754 1 171 MYB Transcription Factor Family AT2G47460 66.082 5.19e-77 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dod06g2754 Myb_DNA-binding 3.5e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g2754 K09422 - gmx:100814275 302.753