Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g2750 ATGGGGAATCAGAAGCAGAAGTGGACGCAGGACGAAGAAAACGCGCTTATCGCTGGCGTTGAAAAGCACGGCCCAGGGAAGTGGAAGAACATTCTCAAAGACCCTCAGTTCGCACCTTTCCTCACTTCACGTTCTAACATCGACCTCAAGGATAAATGGAGAAACTTGAGTGTCAGCAATGGTACTCAAGGGTCCAAAGAGAAATCTAGGGTTCCCAAAATCAAAGCTGTTCCTGCTACCTCAGTCGGCAATGCTCTTGCCGTTGTTCCAGTCACTACTACTGCTCCTGCCACTCCAGTGACTCCTCAACTCGAACCTCCTTCTGATGTTGCTGCGCGTGATCCTTCTGAAAATGACAGTGATGCTAAAAACCCTCCACGGTACAATACAATGGTTTTTGAAGCTCTCTCAGCTCTTAAAGATGCTAATGGATCTGACCTAAATGCCATTGTTGCTTTCATTGAGCAAAAGCATAAGGTTCCTCACAATTTCAGAAGGGCACTAGGTACGAGGTTAAGAAGGCTTGTTAGCCAAGGGAAACTTGAAAAGGTACAGAACTGTTACAGGATAAAAAAGGAGTCCTCATCCGGGACAAAATCACCTGTGCCGCCAAAACAACAGTGA 624 0.4647 MGNQKQKWTQDEENALIAGVEKHGPGKWKNILKDPQFAPFLTSRSNIDLKDKWRNLSVSNGTQGSKEKSRVPKIKAVPATSVGNALAVVPVTTTAPATPVTPQLEPPSDVAARDPSENDSDAKNPPRYNTMVFEALSALKDANGSDLNAIVAFIEQKHKVPHNFRRALGTRLRRLVSQGKLEKVQNCYRIKKESSSGTKSPVPPKQQ* 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g2750 207 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Dod06g2750 207 PANTHER SINGLE MYB HISTONE 4 1 206 IPR044597 GO:0003691
Dod06g2750 207 SUPERFAMILY "Winged helix" DNA-binding domain 123 204 IPR036390 -
Dod06g2750 207 SMART h15plus2 122 187 IPR005818 GO:0000786|GO:0003677|GO:0006334
Dod06g2750 207 SMART sant 4 59 IPR001005 -
Dod06g2750 207 MobiDBLite consensus disorder prediction 96 127 - -
Dod06g2750 207 Pfam linker histone H1 and H5 family 126 186 IPR005818 GO:0000786|GO:0003677|GO:0006334
Dod06g2750 207 Gene3D - 8 84 - -
Dod06g2750 207 PANTHER TELOMERE REPEAT-BINDING FACTOR 4-RELATED 1 206 - -
Dod06g2750 207 Gene3D - 121 205 IPR036388 -
Dod06g2750 207 CDD H15 126 184 IPR005818 GO:0000786|GO:0003677|GO:0006334
Dod06g2750 207 ProSiteProfiles Myb-like domain profile. 1 57 IPR001005 -
Dod06g2750 207 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 124 192 IPR005818 GO:0000786|GO:0003677|GO:0006334
Dod06g2750 207 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Dod06g2750 207 SUPERFAMILY Homeodomain-like 2 59 IPR009057 -
Dod06g2750 207 MobiDBLite consensus disorder prediction 190 207 - -
Dod06g2750 207 CDD SANT_TRF 6 56 - -
Dod06g2750 207 MobiDBLite consensus disorder prediction 187 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g2750 Dod-Chr6 58643966 58647593 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g2750 1 206 Single Myb Histone (SMH) Gene Family AT1G72740 55.238 2.01e-65 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Dod06g2750 Linker_histone 2.9e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g2750 K09422 - gmx:778177 292.737