Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g2730 ATGATGAAGGGTTTGATGTTCTATCACCAACAGCAGCAGCAGCAAGTAGTAGTGGAGGAGAACATGTCTAATTTGATTTCTGCATCAAATGAAGCTAACAGTGTTTCTTCGGGCAACAGAACTGAAACTGGCACCAGTTACCCTCAACAACAATACTTGGCTCCACCAATAACAACACAGGCTACTACTCAGCCACCAAAGAAAAAAAGAAACCTTCCTGGCAACCCAGACCCAGATGCTGAGATTATTGCCCTGTCCCCAAAGAGTCTTCTGACCACTAACAGGTTCATTTGTGAGATCTGCAACAAAGGGTTTCAAAGGGACCAGAATCTTCAGCTTCATAGAAGAGGGCACAATCTGCCATGGAAGTTGAAGAAGAGAACAAGCAAAGAGGTGAAGAAAAAGGTGTATGTGTGCCCTGAACCAACTTGTGTGCACCATGACCCTTCAAGGGCACTAGGGGACTTAACTGGTATAAAGAAGCACTTCTTCAGGAAGCACGGTGAGAAGAAGTGGAAATGTGACAAGTGCTCCAAGAGGTATGCGGTTCAATCAGATTGGAAAGCTCACTCCAAGACCTGTGGCACAAGGGAGTACAGATGTGACTGTGGAACCCTTTTCTCAAGGAGGGACAGTTTCGTAACCCACAGAGCCTTCTGTGACGCACTAGCAGAGGAGAATGCCAGAGCTATCACAGGCAACAACAACAACAACAGCAACAACCCCCATCTCCCTTCCTCACACCCATCATCATCCCATCATCACAACATAAACCTCCAAACCCAATTCAATCCCCAAGACGAAAACAACAACAACAACTTCAACTTCAATGTCTTCCCATTGAAAAGAGAGCAGCACCACCACCAAAGTTTCAACCTCATTAGGCCAGAAACAATACCCCCATGGCTTGGCCCACAAAACAGCACTTCCTCATCATCAATCTTCTCCACCACCACAAGAGACCTGTGCCTACATGAGAGTACCCCAAACCCTAACCCTAGCCTTGGCCCCACAATTCAAGCCTACCATGCTACTGCTGCTGCTGCTGCTGTAGTAGCACCTTTCCCTCACATGTCAGCAACAGCTTTGCTGCAGAAAGCATCTCAGATGGGTGCAACCATGAGCAGCAAAAGTACCGATGCCTCCTCAATTGCCATGATTAGGCCCCACCACCAGGGTCACGTGTCTCCTGATCGTGCTGGAAACAGTTTGAATTTGTCCGCACGTGATCAAGACCCCATTATGACCACAAGTACTACAACAAATATCTCTACTACTGGTACTACTACTACTATGGCAGGCCTAATTGGCCATGCCTTATTGGCACCACCATTTGGGAACAAAGCTGCATTCTCTTCTTCTTCTGGTAATGCTTCATCAATTCTTCATGATGTTATGATGAACTCTTTCTCTCCTGGTTCTGGAGGGTTTGAAGGGACTATCTTTGAGGATGCTTTTGGTGGCATTCTAAATAATGGTAACTTCAAGAAAAATGATGAGAATACCCTTCCAAAGACAAGCGGCGCCACCCATCTTGGTGGTGGCGCTGGCAGTGACGGTGGCCGAAACGAAGGGCTGACCAGAGATTTCTTAGGTCTTAGGCCACTCTCTCATAGTGACATTCTCAGCTTTGCTGGTATTGGGAACTGCATGAGTAACCACCAAAACCAATCTGATCAAAAGCCATGGCAAGGTTAG 1698 0.4682 MMKGLMFYHQQQQQQVVVEENMSNLISASNEANSVSSGNRTETGTSYPQQQYLAPPITTQATTQPPKKKRNLPGNPDPDAEIIALSPKSLLTTNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKKRTSKEVKKKVYVCPEPTCVHHDPSRALGDLTGIKKHFFRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFVTHRAFCDALAEENARAITGNNNNNSNNPHLPSSHPSSSHHHNINLQTQFNPQDENNNNNFNFNVFPLKREQHHHQSFNLIRPETIPPWLGPQNSTSSSSIFSTTTRDLCLHESTPNPNPSLGPTIQAYHATAAAAAVVAPFPHMSATALLQKASQMGATMSSKSTDASSIAMIRPHHQGHVSPDRAGNSLNLSARDQDPIMTTSTTTNISTTGTTTTMAGLIGHALLAPPFGNKAAFSSSSGNASSILHDVMMNSFSPGSGGFEGTIFEDAFGGILNNGNFKKNDENTLPKTSGATHLGGGAGSDGGRNEGLTRDFLGLRPLSHSDILSFAGIGNCMSNHQNQSDQKPWQG* 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g2730 565 ProSiteProfiles Zinc finger C2H2 type domain profile. 96 118 IPR013087 -
Dod06g2730 565 Pfam Zinc-finger double-stranded RNA-binding 96 118 IPR022755 -
Dod06g2730 565 Gene3D Classic Zinc Finger 150 230 - -
Dod06g2730 565 Gene3D Classic Zinc Finger 77 143 - -
Dod06g2730 565 MobiDBLite consensus disorder prediction 500 523 - -
Dod06g2730 565 MobiDBLite consensus disorder prediction 231 257 - -
Dod06g2730 565 ProSitePatterns Zinc finger C2H2 type domain signature. 98 118 IPR013087 -
Dod06g2730 565 SMART c2h2final6 172 192 IPR013087 -
Dod06g2730 565 SMART c2h2final6 137 167 IPR013087 -
Dod06g2730 565 SMART c2h2final6 96 118 IPR013087 -
Dod06g2730 565 MobiDBLite consensus disorder prediction 30 69 - -
Dod06g2730 565 PANTHER PROTEIN INDETERMINATE-DOMAIN 7 25 548 - -
Dod06g2730 565 SUPERFAMILY beta-beta-alpha zinc fingers 95 192 IPR036236 -
Dod06g2730 565 MobiDBLite consensus disorder prediction 30 81 - -
Dod06g2730 565 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 25 548 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g2730 Dod-Chr6 58382850 58387789 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g2730 22 565 IDZ Gene Family AT3G13810 45.407 5.76e-134 397
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dod06g2730 zf-C2H2_jaz 8.5e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g2730 K25870 - gmx:100808344 610.912
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod06g2730 06 58382850 58387789 Dod06g2730 06 58382850 58387789 ECH
Dod10g1902 10 40578905 40586584 Dod06g2730 06 58382850 58387789 PCT