Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g2707 ATGGCTTACTTTGAGAGCTCGCTAGGTGGACCTTCATGGATTTGTGGAGGAGTGGTCAACCTGGCCACTGTGTGCCTTCAAAGAACCATAATTGATGGCATAAATGTGCTCTTCTTCTGTGTTTTCTGCATATTTATGCTGATTGGTTTTGGTAGTAAGCATGATTCAACTGATATCCAAAGAAGGGACTGTTTCTTTGTGGTTGCAGCAGTCTGTTCTACTCTTACTAGCATTATTTATTTTGGTTTTGGTTTGTATGATTTCATTGATCATAATGGAAAAATAGATACTTCAAGTTTGGGGGCTTGCATCATAAGAGGCCTTGTTTGGATCTTTCTTACAATTTCATTGCTTACTCAAAGGAGCAAATGGATCATATACCTGAACTCTATTTGGTGGGTGTGCTCATGTGCACTACTCTCTGCTCTGAATATTGAGCTTCTTTTTAAAGTGCACAGTATTCCTGTGGTTGATTTGCTTGCTTGGCTTGTGAGCTTCCTTCTTCTTCTTTGTGCTTTGAGAAACCGTGGTTACTTTGTTTCAAAACCGTCCCAAAAGGACACCATGTTTGAATCATTGTTGCCTGAAACCGAAAAAGCTGAAATAAGCCTAACAGGTTTAAGCCAGGCCAATTTTTGTAGCAAATTAACATTTTCTTGGATTAATCCTTTACTCTCTTTGGGTAACACAAAGGCATTAGCTCTTGAAAACGTCCCTCCTCTAGCTTCTGAAGACAAAGCTGATTTGTCCTACCAAAAGTTTGCGAGCACATGGGATTCTTTGTTAAGTGAAAGGAGCTCAAACAGTTCCAAGAAGAACTTGGTTATCCTGGCCATGACAAGGGTTTTTTGGAGAGAGAATGTTTACATAGCAGTCAATGCACTAGCTAGATCAGTTGCTGCAGCTGTTTCTCCTCTGATAATCTATTTTTTTGTAAATTATGCGGGCAATGATGCAGCTGGCTTGAATGAGGGCCTTACTATATTGGGGTGCCTTGTTCTTGTCAAATTGGTGGAGTGTTGGTGTCAAAGGCATTCAAACTTCGACGCGAGGAGGTCAGGAATGAGAATGAGGTCAGCATCAATGGTGGCAGTGTACGAGAAGCTGTTAAAGCTTTCGAGCTTGGGAAGGCGAAGGCACGCAACTGGGGAGATTGTGAACTACATAGCAGTTGATGCCTACAGGCTGGGAGAATTCTTGTGGTGGTTCCATACAGGATGGAGCCTTGCATTGCAACTTCTCTTAGCCATTGGTGTCCTTTACTATGTTGTGGGAATTAGTGCTCTTCCTGGATTAGTCCTCCTCCTCTTGTTTAGTGTCTTTAATGTTCCATATGCACATAAGATTAAAAAATGTCAGTCACAAGTCCTGGTCGCACAAGATGAGCGACTCAGGTCAACTTCAGAGATCCTCAACAATATCAAGATCATTAAGTTACAATCTTGGGAAGATAAGTTCAAGAACTTGGTTGAATCACAGCGTGCTAGTGAGTTCAAGTGGTTGTCTGAGACACAGTTCACAAAGGCATATGGAACTATACTGTATTTCATATCACCAACCATTATTTGTGCTGTGGTTTTGTTAGGATGTGCTTTCTTTGGGACCGCTTCATTAGATGCCGGCACTATCTTCACAGTTCTTGCCACATTGAGAAGCATGGGAGAACCTGTCAGATTTATACCTGAGGCTGTTTCTGTCATGACTCAAGTTAAAGTCTCATTTGACAGGCTTGACACTTTTCTCCTTGATCATGAGCTGAACACCAATGAAAGGAGGAGCATTCTGATGCCAAAATCAGATAAATGCGTTGAAATAGAGGCAGGTTGTTTCAGTTGGGATGCGGAATCAGGGAACCTGACTCTGAGAGACATCAATTTAGACATAAAAAGGGGCCAAAAGGTTGCTGTTTGTGGTCAAGTTGGATCTGGCAAGTCTTCCCTATTACAAGCAATCCTAGGAGAGATGCCAAAAGTTTCAGGAACTGTCATGGAAGGTGGGCGCATTGCTCAAGCTGGAAGCCATGGGGAGCTGTTAACACTTGGGACAACCTTTGAAACACTTATGAATGCTCATAAAGATGCTATAACTGTATTTGGTACACTTCATCAGAACCAAGAAGATGGTCAAGTAGCACATGGAGTTAAATCTGAAGAGAAGCCTCATGGAAGTGATCTCACCAAAAGAAACAGCAGTGGAGAAATACGCCCGGCAAACCTTGATGAGAAACAACTTACAGAAGAAGAACAAAGAGAAATTGGAACTGCTGGATGGAAACTGTTCATGGATTATGTTGTTTCATCAGATTTGAGTACTTTGGATTTTGACATACCTTTCGCGGTAGTCTTTGCAGCACAAAGTGGATTTGAACTTCTAACAGGAATTGCAATTATGACTTCAGTCACATGGCCAGTTCTTGTGGTTGCCATTCTAGCTCTTGTAGCTGCAAACTATATTAAGGACTACTACCAAGCTTCTGCGAGGGAACTTGTAAGAATTAATGGAACAACAAAAGCACCAGTTATGAATTATTCAACTGAGACATCAGCAGGAGTGGTCACTGTAAGAGCTTTCAAGATGGTGGACAGATTCTTCCAAACCTTCCTACATCTAGTTGACACTGATGCTACACTTTTCCTGCATACTAATGCTGCTATGGAGTGGTTACTACTAAGAACTGAAATACTTCAAAATCTGATCCTTTTCACTGCAGCTTCTCTATTTGTGTTTCTTCCCAAGGGATCAATAGCTCCTGGGCTTGTTGGACTTTCTCTATCTTATGCTCTTTCATTGACAAGGACCCAGATTTATTTTACTCAGTGCTCATGTCAGTTATCAAACTACATCATCTCTGTTGAAAGAATCAAACAATTCATGCATATACCACAAGAGCCTCCAAAAATATTGGAGAATAATAGGCCACCATCTTCATGGCCCTCGAAGGGTAGGATAGAGTTTCAAGCTTTGAAGGTTAGGTACCGTCCAAATGCTCCATTAGTTTTGAATGGAATCACTTGTACTTTGAAAGAAGGGACTAGAATTGGAGTTGTGGGAAGGACCGGAAGTGGAAAAACCACACTTCTAAGTGTATTGTTTCGCTTGGTGGAGCCTACAAGTGGTGAAATCATTATAGATGGGCTTAACATATGCTCAATAGGGCTAAAGGATCTGAGAATGAAGCTAAGCATCATCCCCCAAGAACCTATTCTTTTCAGGGGCAGTGTTCGAACCAACTTGGACCCACTAGACCAATTCTCTGATGATGAGATATGGAAGGTTCTGGAAATGGTTCAACTGAAGGAGGTTATAAGTGGACTACCAAATCTACTGGACTCATCAGTGAGTGATGAAGGGGAAAATTGGAGCGTCGGCCAGCGCCAACTATTTTGCCTTGGAAGAGTCCTTCTAAAAAGGAATAGAATTCTAGTTCTGGATGAAGCAACGGCCTCTATTGATTCTGCAACAGATGCCATTTTACAAAGAGTCATCAGGCAGGAATTCTCTGACTGCACAGTTATAACTGTGGCCCATAGAGTTCCAACTGTTATAGACAGTGACATGGTCATGGTTCTGTCTTTTGGCAATCTGGTGGAGTACGATGAACCTTCAAAACTAATGGAGGACAATTCTTCCTCATTCTCCAAGCTTGTTGCTGAATACTGGGCCAGCTGCATGGGGAATTAA 3681 0.4184 MAYFESSLGGPSWICGGVVNLATVCLQRTIIDGINVLFFCVFCIFMLIGFGSKHDSTDIQRRDCFFVVAAVCSTLTSIIYFGFGLYDFIDHNGKIDTSSLGACIIRGLVWIFLTISLLTQRSKWIIYLNSIWWVCSCALLSALNIELLFKVHSIPVVDLLAWLVSFLLLLCALRNRGYFVSKPSQKDTMFESLLPETEKAEISLTGLSQANFCSKLTFSWINPLLSLGNTKALALENVPPLASEDKADLSYQKFASTWDSLLSERSSNSSKKNLVILAMTRVFWRENVYIAVNALARSVAAAVSPLIIYFFVNYAGNDAAGLNEGLTILGCLVLVKLVECWCQRHSNFDARRSGMRMRSASMVAVYEKLLKLSSLGRRRHATGEIVNYIAVDAYRLGEFLWWFHTGWSLALQLLLAIGVLYYVVGISALPGLVLLLLFSVFNVPYAHKIKKCQSQVLVAQDERLRSTSEILNNIKIIKLQSWEDKFKNLVESQRASEFKWLSETQFTKAYGTILYFISPTIICAVVLLGCAFFGTASLDAGTIFTVLATLRSMGEPVRFIPEAVSVMTQVKVSFDRLDTFLLDHELNTNERRSILMPKSDKCVEIEAGCFSWDAESGNLTLRDINLDIKRGQKVAVCGQVGSGKSSLLQAILGEMPKVSGTVMEGGRIAQAGSHGELLTLGTTFETLMNAHKDAITVFGTLHQNQEDGQVAHGVKSEEKPHGSDLTKRNSSGEIRPANLDEKQLTEEEQREIGTAGWKLFMDYVVSSDLSTLDFDIPFAVVFAAQSGFELLTGIAIMTSVTWPVLVVAILALVAANYIKDYYQASARELVRINGTTKAPVMNYSTETSAGVVTVRAFKMVDRFFQTFLHLVDTDATLFLHTNAAMEWLLLRTEILQNLILFTAASLFVFLPKGSIAPGLVGLSLSYALSLTRTQIYFTQCSCQLSNYIISVERIKQFMHIPQEPPKILENNRPPSSWPSKGRIEFQALKVRYRPNAPLVLNGITCTLKEGTRIGVVGRTGSGKTTLLSVLFRLVEPTSGEIIIDGLNICSIGLKDLRMKLSIIPQEPILFRGSVRTNLDPLDQFSDDEIWKVLEMVQLKEVISGLPNLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRVIRQEFSDCTVITVAHRVPTVIDSDMVMVLSFGNLVEYDEPSKLMEDNSSSFSKLVAEYWASCMGN* 1227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g2707 1226 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 765 946 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Dod06g2707 1226 Pfam ABC transporter transmembrane region 765 930 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Dod06g2707 1226 Pfam ABC transporter transmembrane region 294 549 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Dod06g2707 1226 Pfam ABC transporter 1000 1148 IPR003439 GO:0005524
Dod06g2707 1226 SMART AAA_5 630 808 IPR003593 -
Dod06g2707 1226 SMART AAA_5 1009 1202 IPR003593 -
Dod06g2707 1226 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 603 852 IPR003439 GO:0005524
Dod06g2707 1226 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 983 1217 IPR003439 GO:0005524
Dod06g2707 1226 MobiDBLite consensus disorder prediction 711 728 - -
Dod06g2707 1226 Gene3D ABC transporter type 1, transmembrane domain 763 964 IPR036640 GO:0005524|GO:0016021
Dod06g2707 1226 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 294 569 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Dod06g2707 1226 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 973 1209 IPR027417 -
Dod06g2707 1226 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 550 683 IPR027417 -
Dod06g2707 1226 CDD ABC_6TM_ABCC_D1 289 577 IPR044746 GO:0140359
Dod06g2707 1226 Gene3D ABC transporter type 1, transmembrane domain 276 582 IPR036640 GO:0005524|GO:0016021
Dod06g2707 1226 CDD ABCC_MRP_domain2 981 1201 - -
Dod06g2707 1226 PANTHER NHPM BACTERIOCIN SYSTEM ABC TRANSPORTER, PEPTIDASE/ATP-BINDING PROTEIN-RELATED 63 662 - -
Dod06g2707 1226 PANTHER NHPM BACTERIOCIN SYSTEM ABC TRANSPORTER, PEPTIDASE/ATP-BINDING PROTEIN-RELATED 662 767 - -
Dod06g2707 1226 CDD ABC_6TM_ABCC_D2 766 958 IPR044726 GO:0140359
Dod06g2707 1226 MobiDBLite consensus disorder prediction 707 735 - -
Dod06g2707 1226 Gene3D - 583 705 IPR027417 -
Dod06g2707 1226 SUPERFAMILY ABC transporter transmembrane region 276 577 IPR036640 GO:0005524|GO:0016021
Dod06g2707 1226 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 766 1219 - -
Dod06g2707 1226 PANTHER NHPM BACTERIOCIN SYSTEM ABC TRANSPORTER, PEPTIDASE/ATP-BINDING PROTEIN-RELATED 766 1219 - -
Dod06g2707 1226 Pfam ABC transporter 621 681 IPR003439 GO:0005524
Dod06g2707 1226 Gene3D - 967 1218 IPR027417 -
Dod06g2707 1226 SUPERFAMILY ABC transporter transmembrane region 765 965 IPR036640 GO:0005524|GO:0016021
Dod06g2707 1226 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 63 662 - -
Dod06g2707 1226 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 662 767 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g2707 Dod-Chr6 58060033 58067758 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g2707 981 1216 Calmodulin-binding Proteins AT2G36910 30.453 3.85e-30 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g2707 - - csat:109125179 1248.03