Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g2684 ATGGATGGTCTAAATTGGGATGCCTCACAACTGGCAACAGCAACTACACCAATCCTGTGGAGCACCAAGCAACAAGACCTTGAAGGAGGCTACTCCATGCCCAACTTAACTTCAAGTGTTCTTAATAATCAAATCCAAGAGATGCAGAAATCTCAAACAATTCATACCTATACAAATCCTGAAGATATGATTTATCAGCCACCAGTTGCTATCACTTCAGAGATAATGAATAATGTGATGCCAAACACAAATCCATCACGGGATCATGCAGCAACAGGAGCTGGACCCAGTTGGGGACCATACAGTATGAACCAGATAAGTAACTACATGCCAGATTTCAACATGGCCCACCAACAAATTATTATCAATGATTCAAATAATGGAAAGGGTGATGCTTGTTCTCTTGAGTCTCTTGATTGCTTGCTTTCAGCTACTAACAGCAACACTGACAAATCTGTTGAAGATGATTCTGGGATTCCAATGATATTATCTGACTGCAGAAACTTGTGGAACTTCAGCTATGGCAGTGCAGTTTCCTCTGGTGAATCTGAGAGCAATGCTTCCAATTCCAATGGTAGAATAATAAACATAGACAAGCAGTGTCCAATCAATGAACATGATGAAACAATGTCTCAAACCTCCTCAGATCATCACATCAATCAAGGAAAAGGAAATCAATCTCAGCTTATCAAAATTGGTACCAATGATTCACCTTACTTCAGTGTTGTGCAGAATTCTTCTTCTGCTACTGAAGGTTGTTTTTCCAACCTTATCTCACGGAATCCACCCAAATCCAAGAAACCCAGATGGGAAAAGAGTCCATGTTCATCTACAATCAATTTCCAGCATCCAAATAATTCATCAGTGTTATCATCTTCCATTGAAGAGACTGATCCAGAGGCCATGGCACAAATAAAGGAAATGATATATAGAGCTGCAGCTTTTAGGCCTGTGAACTTGGGCTTGGAGGTGACTGAAAAGCCAAAGAGGAAGAATGTGAGGATATCAAATGATCCACAAACTGTGGCTGCAAGGCAAAGAAGAGAAAGAATAAGTGAGAGGATTAGGGTACTGCAGAAACTAGTCCCTGGGGGAAGCAAGATGGACACTGCATCAGTGCTCGATGAGGCTGCAAACTACCTCAAGTTTCTAAGGTCACAGGTCAAGGCACTTGAAAGTCTAGGCAACAAAGTTGAGACAATGATGAATTACCCTCCTACTAGCATTGCCTTCTCTTTCAACTGTTCTTTTCCTATGCAAGCCTCTGGCCGCATCGATCATTCTCAGGGTTGA 1293 0.4161 MDGLNWDASQLATATTPILWSTKQQDLEGGYSMPNLTSSVLNNQIQEMQKSQTIHTYTNPEDMIYQPPVAITSEIMNNVMPNTNPSRDHAATGAGPSWGPYSMNQISNYMPDFNMAHQQIIINDSNNGKGDACSLESLDCLLSATNSNTDKSVEDDSGIPMILSDCRNLWNFSYGSAVSSGESESNASNSNGRIINIDKQCPINEHDETMSQTSSDHHINQGKGNQSQLIKIGTNDSPYFSVVQNSSSATEGCFSNLISRNPPKSKKPRWEKSPCSSTINFQHPNNSSVLSSSIEETDPEAMAQIKEMIYRAAAFRPVNLGLEVTEKPKRKNVRISNDPQTVAARQRRERISERIRVLQKLVPGGSKMDTASVLDEAANYLKFLRSQVKALESLGNKVETMMNYPPTSIAFSFNCSFPMQASGRIDHSQG* 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g2684 430 Pfam Helix-loop-helix DNA-binding domain 345 384 IPR011598 GO:0046983
Dod06g2684 430 Gene3D - 340 404 IPR036638 GO:0046983
Dod06g2684 430 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 1 421 IPR045843 GO:0003700|GO:0006355
Dod06g2684 430 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 341 403 IPR036638 GO:0046983
Dod06g2684 430 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 335 384 IPR011598 GO:0046983
Dod06g2684 430 SMART finulus 341 390 IPR011598 GO:0046983
Dod06g2684 430 MobiDBLite consensus disorder prediction 272 291 - -
Dod06g2684 430 Coils Coil 374 394 - -
Dod06g2684 430 MobiDBLite consensus disorder prediction 257 291 - -
Dod06g2684 430 PANTHER TRANSCRIPTION FACTOR BHLH87 1 421 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g2684 Dod-Chr6 57576046 57577405 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g2684 137 427 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 50.338 1.07e-77 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dod06g2684 HLH 4.6e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g2684 - - vra:106773034 476.092
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod06g2684 06 57576046 57577405 Dod06g2684 06 57576046 57577405 ECH
Dod10g1943 10 41195796 41197425 Dod06g2684 06 57576046 57577405 PCT