Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g2639 ATGGATGGAAGATTAAGAACTGCGGAGGTGTCTCACAAGATGCTCGATTTGATCCCAAAAGGCAAAGAAGAGAAGGAACTGGAGCTGAGACTTGGTCCACCTGGTGAACAAGATTGGTCTCACAATGAAAACAAAAGAGAAAGGGATGAATCATCACTCTTTCTTGGTTACTTCTCAACACACAAAATTCACCACCTGCATATTCAACACCAGGATAAGGCTAAAGCTTCATCATTTCTTCAGCTCCCATCAAGCACACAGAACATCCCATCGATGGGAAAGGAATCAAAGGATGCATCACAACCTTCTTGTCCTAAAGTGGTAGGTTTGCATAGTGCAGAGAAGAAAGCATTCTCACCCTCTTCTGCAAACACAGATGTCCCCAACAGCTCCCAGAAAAGAACTGCACCTGGTGGTCCAGCTGTGGGTTGGCCCCCAATTCGTTCATTCAGGAAGAACCTTTCAAATGGAAGCTCTTCTAAGAACCCTCATGGGTCCCACCAACACCAGCCTCATGTTCTAAATCAAGTTGCTATTAAGGAACATGTTCACAATCACAACAATGTTAACAAGGGCTTGTTTGTTAAGATTAATATGGATGGAGTTCCAATTGGTAGAAAAGTGGACATCAATGCTTACGGCAGCTATGACAAACTTTCCTCTGCTGTTGATGACCTCTTTAGAGGCCTCCTTGCAGCTCAAAGGGATTCCTCCGCTGGTGGAATTCAGAACAAGCAAGAGGAAGAGAAAGCGATTACGGGTCTGTTAGATGGAAGTGGGGAATATACCCTTCTTTATGAGGATAATGAAGGAGACAGGATGCTTGTTGGGGATGTGCCATGGCACATGTTTGTGTCAACAGTGAAGAGATTGCGAGTGGTGAAGACTTCTGATCTTTCTGCTTTCTCCGTTGGCAGTAAGAAAGGACACATACACCACTCGACAAGGCAATGA 954 0.4465 MDGRLRTAEVSHKMLDLIPKGKEEKELELRLGPPGEQDWSHNENKRERDESSLFLGYFSTHKIHHLHIQHQDKAKASSFLQLPSSTQNIPSMGKESKDASQPSCPKVVGLHSAEKKAFSPSSANTDVPNSSQKRTAPGGPAVGWPPIRSFRKNLSNGSSSKNPHGSHQHQPHVLNQVAIKEHVHNHNNVNKGLFVKINMDGVPIGRKVDINAYGSYDKLSSAVDDLFRGLLAAQRDSSAGGIQNKQEEEKAITGLLDGSGEYTLLYEDNEGDRMLVGDVPWHMFVSTVKRLRVVKTSDLSAFSVGSKKGHIHHSTRQ* 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g2639 317 PANTHER AUXIN-RESPONSIVE PROTEIN IAA26 21 310 - -
Dod06g2639 317 MobiDBLite consensus disorder prediction 117 136 - -
Dod06g2639 317 MobiDBLite consensus disorder prediction 151 170 - -
Dod06g2639 317 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 21 310 IPR003311 GO:0005634|GO:0006355
Dod06g2639 317 Pfam AUX/IAA family 26 301 IPR033389 -
Dod06g2639 317 MobiDBLite consensus disorder prediction 84 170 - -
Dod06g2639 317 MobiDBLite consensus disorder prediction 19 45 - -
Dod06g2639 317 Gene3D - 186 308 - -
Dod06g2639 317 ProSiteProfiles PB1 domain profile. 192 296 IPR000270 GO:0005515
Dod06g2639 317 MobiDBLite consensus disorder prediction 84 98 - -
Dod06g2639 317 SUPERFAMILY CAD & PB1 domains 187 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g2639 Dod-Chr6 56205878 56213472 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g2639 195 307 B3 DNA Binding Superfamily AT4G23980 30.088 7.85e-13 67.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Dod06g2639 AUX_IAA 2.2e-69 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g2639 K14484 - qsu:111988286 332.798
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod06g2639 06 56205878 56213472 Dod10g1950 10 41317947 41321320 ECH
Dod06g2639 06 56205878 56213472 Dod06g2639 06 56205878 56213472 ECH
Dod10g1950 10 41317947 41321320 Dod06g2639 06 56205878 56213472 PCT