Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g2621 ATGGAAGTGCCGGAATACTTCGTCGGTGGCTATTACGGAGCCGGTGGGGACCAATTCTCGCCGGAGAAGCGGCACGGAGGAGGCGGCGACCAGAAGCACGGCGGCGGCGGAGAGCCGTTCGCCATCGACGACCTCCTTGACTTCTCCAACGCAGACGCCATCATGTCCGACGGATTCTTCGACAATGTTGCCGGGAATTCCGCGGATTCCTCAACCGTCACCGCCTTGGACAGCTGCAACTCCTCAATCTCCGGCGGCGACAACCATTTCCCCGCCGGCATGGTCCCCCGCGCATTCTCCTCCGGCGATCCACAATTCTCTGGCGGAGAACTCTGCGTCCCGTACGATGAAATGGCGGAACTGGAGTGGCTCTCGACCTTCGTAGAGGACTCGTTCTCCGCCGAGGAAGAGCTGAAAACGCTGCAGCTTCTCTCCGGCGGTGCTTCAGCCGCAGCAATCGGCGGTGGCAAGCCGCAGACGCCGGAGTCGTCATCTTCCTCTGACACACTCCCTTCGCCGTTCGACGCCGCGCCGAACGGGCCGTTTCTCCTGCATCCTGAAACGCCGCTCCCTGGCAAGGCGCGCAGCAAGCGCTCACGCGCGGCGCCGGGGGACTGGTCCACGCGCCTCCTGCACCTAGCTACCCCGCCGCCGTCGGCGGAGGAGCAGAAGCCGCCGATGAAATCGGCGCCGTCGATGAAGAGAAGAGAAGCGAATGCGGAGTGTTCGGGGAGGAAGTGCCTTCATTGTGGTGCGGAAAAGACGCCGCAGTGGCGGACTGGGCCCATGGGCCCAAAGACTCTGTGCAATGCGTGCGGCGTGAGGTTCAAGTCGGGCCGGTTGGTGCCCGAGTACAGGCCCGCTGCGAGCCCAACATTCGTCTCGACGAAGCACTCGAATTCTCATCGGAAGGTTCTGGAACTGAGGAGGCAGAAGGACCTGCAGCGGCAACAGCATCAGCATCAGCATCAGCAGCAGCTGCTGAGTCATCACCACCACCACCCTCATCAGAGTTCGATTTTCGGCGTATCGAACGGTGGAGATGAGTTCTTGATCCATCATCATCATCACCACCACCCCCATTGTGGCCCTGATTTTAGGCATGTTATCTAG 1113 0.6146 MEVPEYFVGGYYGAGGDQFSPEKRHGGGGDQKHGGGGEPFAIDDLLDFSNADAIMSDGFFDNVAGNSADSSTVTALDSCNSSISGGDNHFPAGMVPRAFSSGDPQFSGGELCVPYDEMAELEWLSTFVEDSFSAEEELKTLQLLSGGASAAAIGGGKPQTPESSSSSDTLPSPFDAAPNGPFLLHPETPLPGKARSKRSRAAPGDWSTRLLHLATPPPSAEEQKPPMKSAPSMKRREANAECSGRKCLHCGAEKTPQWRTGPMGPKTLCNACGVRFKSGRLVPEYRPAASPTFVSTKHSNSHRKVLELRRQKDLQRQQHQHQHQQQLLSHHHHHPHQSSIFGVSNGGDEFLIHHHHHHHPHCGPDFRHVI* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g2621 370 SMART GATA_3 241 291 IPR000679 GO:0006355|GO:0043565
Dod06g2621 370 CDD ZnF_GATA 246 293 IPR000679 GO:0006355|GO:0043565
Dod06g2621 370 MobiDBLite consensus disorder prediction 158 173 - -
Dod06g2621 370 PANTHER GATA TRANSCRIPTION FACTOR 9 1 370 - -
Dod06g2621 370 MobiDBLite consensus disorder prediction 149 233 - -
Dod06g2621 370 MobiDBLite consensus disorder prediction 18 39 - -
Dod06g2621 370 MobiDBLite consensus disorder prediction 312 346 - -
Dod06g2621 370 Pfam GATA zinc finger 247 280 IPR000679 GO:0006355|GO:0043565
Dod06g2621 370 Gene3D - 242 329 IPR013088 GO:0006355|GO:0008270
Dod06g2621 370 ProSiteProfiles GATA-type zinc finger domain profile. 241 277 IPR000679 GO:0006355|GO:0043565
Dod06g2621 370 ProSitePatterns GATA-type zinc finger domain. 247 272 IPR000679 GO:0006355|GO:0043565
Dod06g2621 370 PANTHER GATA TRANSCRIPTION FACTOR 1 370 - -
Dod06g2621 370 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 244 304 - -
Dod06g2621 370 PIRSF Txn_fac_GATA_plant 28 337 IPR016679 GO:0003677|GO:0005634|GO:0045893
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g2621 Dod-Chr6 55903688 55905470 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g2621 34 370 C2C2-Gata Transcription Factor Family AT4G32890 43.804 1.18e-76 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Dod06g2621 GATA 5e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g2621 - - aip:107619293 544.273
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod06g2621 06 55903688 55905470 Dod06g2621 06 55903688 55905470 ECH