Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g2617 ATGACACAAACAACAACAACAACCACAACCACCTCTTCCGAAGCCACTAGCACCAGCACCAACTCCACATCGCCGCCACACTCACATTCCCTCCCAAACCCTCCCTCAAAAGACTCCTCTCCCTCTTCTTCTTCCTCCTCTTCAAAATCCCAAAAAACAGAGCACCCAAAAACAGAGCATGAAAAAACAGAGCACCCCAATAAACAGGGCAGGCCCAAGAGGCCCAGAGATTGCAGCAAGCATGCGGTGTACCACGGTGTCCGAAAGCGCAATTGGGGCAAATGGGTGTCCGAAATCAGGGAGCCACGGAAGAAATCACGCATCTGGCTAGGGACATTCGCCACCCCTGAAATGGCGGCGAGAGCACACGACGTCGCATCGCTCTGCATCAAGGGCCAATCAGCGATCCTCAACTTCCCCGAACTCACAGACACGCTCCCCAGGCCTGTCACGTGCTCCCCACGTGACATCCAGGCCGCTGCAGCAGCTGCAGCGGCCATGGTGAACTTAGACGCTGTTGCGGTATCTTCACAATCACAACAGTCATCTTCATCACTCTGCTCCGAAGGAGGGAGAGAGTCCTCTGAACTCAGCGAGATTGTTGAGCTTCCAAACATTGAAGATGAAGGGTTTGAGTTTGACTCGGTTGCTGCTGCTGAGTCGCGGAACGAGTTCATGTTGCTTGACATGGTGGATAATGGTTGGGCGTATCCACCAATGGTGTCAGAGAGTGTTGAGTTCTGTTGTGGAAGTTTCTCTGAGGAGTTCTCTGTTGCACAACAAGAGGGTGGTTTCTTCATTGCTGATAGCTCTGAATCTGAGATACTACGTATTTGGGACTGA 843 0.5219 MTQTTTTTTTTSSEATSTSTNSTSPPHSHSLPNPPSKDSSPSSSSSSSKSQKTEHPKTEHEKTEHPNKQGRPKRPRDCSKHAVYHGVRKRNWGKWVSEIREPRKKSRIWLGTFATPEMAARAHDVASLCIKGQSAILNFPELTDTLPRPVTCSPRDIQAAAAAAAAMVNLDAVAVSSQSQQSSSSLCSEGGRESSELSEIVELPNIEDEGFEFDSVAAAESRNEFMLLDMVDNGWAYPPMVSESVEFCCGSFSEEFSVAQQEGGFFIADSSESEILRIWD* 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g2617 280 MobiDBLite consensus disorder prediction 1 51 - -
Dod06g2617 280 Pfam AP2 domain 83 132 IPR001471 GO:0003700|GO:0006355
Dod06g2617 280 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 45 245 - -
Dod06g2617 280 ProSiteProfiles AP2/ERF domain profile. 83 140 IPR001471 GO:0003700|GO:0006355
Dod06g2617 280 CDD AP2 84 142 IPR001471 GO:0003700|GO:0006355
Dod06g2617 280 MobiDBLite consensus disorder prediction 52 81 - -
Dod06g2617 280 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 45 245 - -
Dod06g2617 280 SUPERFAMILY DNA-binding domain 83 141 IPR016177 GO:0003677
Dod06g2617 280 SMART rav1_2 83 146 IPR001471 GO:0003700|GO:0006355
Dod06g2617 280 MobiDBLite consensus disorder prediction 1 81 - -
Dod06g2617 280 PRINTS Ethylene responsive element binding protein signature 106 122 IPR001471 GO:0003700|GO:0006355
Dod06g2617 280 PRINTS Ethylene responsive element binding protein signature 84 95 IPR001471 GO:0003700|GO:0006355
Dod06g2617 280 Gene3D AP2/ERF domain 83 141 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g2617 Dod-Chr6 55846610 55848416 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g2617 61 250 AP2-EREBP Transcription Factor Family AT5G11590 52.764 2.27e-56 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dod06g2617 AP2 4.9e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g2617 K09286 - ahf:112777714 244.588
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod06g2617 06 55846610 55848416 Dod06g2617 06 55846610 55848416 ECH