Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g2612 ATGCCTGCCATAGCATTCGGACGCTTTAATGATTCCTTCAGCTTTGGCTCCATCAAGGCCTATGTTGCTGAGTTCATCTCAACTTTGATCTTTGTTTTTGCTGGTGTTGGTTCAGCAATAGCCTATGGTAAGTTGACATCAGATGCAGCTCTTGATCCTGCTGGGTTGGTAGCAGTTGCTGTTTGCCATGGTTTTGCTCTCTTTGTTGCTGTTTCTGTTGGTGCCAACATTTCTGGTGGCCATGTCAACCCTGCTGTGACCTTTGGCTTGGCTCTTGGTGGCCAGATCACCATCCTCACTGGTATCTTCTACTGGATTGCACAGCTTGTTGGCTCCATAGTGGCGTGTTATCTCCTTTCCTATGTCACAGGTGGCTTGACAACTCCCATCCACAGTGTGGCAGCTGGAGTTGGCGCCTTTGAAGGAGTTGTTGCTGAGATTGTGATCACATTTGGACTGGTCTACACTGTGTATGCCACAGCAGCTGACCCCAAGAAGGGCTCATTGGGAACCATTGCACCCATTGCCATTGGTTTCATTGTTGGTGCCAACATCTTGGCAGCAGGTCCATTCTCTGGTGGCTCAATGAACCCTGCAAGGTCCTTTGGCCCTGCAGTTGTCAGTGGCAACTTCCAGGACAACTGGATCTACTGGGTTGGACCCCTCATTGGTGGTGGCCTTGCTGGCCTTATCTATGGCAATGTGTTCATCCACTCTGACCATGCACCTCTCCCCAGTGAGTTTTGA 747 0.5007 MPAIAFGRFNDSFSFGSIKAYVAEFISTLIFVFAGVGSAIAYGKLTSDAALDPAGLVAVAVCHGFALFVAVSVGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLVGSIVACYLLSYVTGGLTTPIHSVAAGVGAFEGVVAEIVITFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGNFQDNWIYWVGPLIGGGLAGLIYGNVFIHSDHAPLPSEF* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g2612 248 Pfam Major intrinsic protein 16 232 IPR000425 GO:0015267|GO:0016020|GO:0055085
Dod06g2612 248 TIGRFAM MIP: MIP family channel proteins 23 232 IPR000425 GO:0015267|GO:0016020|GO:0055085
Dod06g2612 248 ProSitePatterns MIP family signature. 81 89 IPR022357 -
Dod06g2612 248 PANTHER AQUAPORIN-8 1 248 IPR034294 -
Dod06g2612 248 CDD MIP 19 235 IPR000425 GO:0015267|GO:0016020|GO:0055085
Dod06g2612 248 SUPERFAMILY Aquaporin-like 13 241 IPR023271 -
Dod06g2612 248 Gene3D Glycerol uptake facilitator protein. 2 246 IPR023271 -
Dod06g2612 248 PANTHER MIP PROTEIN 1 248 - -
Dod06g2612 248 PRINTS Major intrinsic protein family signature 19 38 IPR000425 GO:0015267|GO:0016020|GO:0055085
Dod06g2612 248 PRINTS Major intrinsic protein family signature 178 200 IPR000425 GO:0015267|GO:0016020|GO:0055085
Dod06g2612 248 PRINTS Major intrinsic protein family signature 100 119 IPR000425 GO:0015267|GO:0016020|GO:0055085
Dod06g2612 248 PRINTS Major intrinsic protein family signature 63 87 IPR000425 GO:0015267|GO:0016020|GO:0055085
Dod06g2612 248 PRINTS Major intrinsic protein family signature 145 163 IPR000425 GO:0015267|GO:0016020|GO:0055085
Dod06g2612 248 PRINTS Major intrinsic protein family signature 215 235 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g2612 Dod-Chr6 55772663 55774772 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g2612 1 246 Major Intrinsic Protein MIP AT3G16240 79.757 2.22e-140 392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g2612 K09873 - gmx:100803901 427.557
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod06g2612 06 55772663 55774772 Dod06g2612 06 55772663 55774772 ECH