Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g2543 ATGGATGTTACCATCACGGAACGGAATAGTCATGCCCAGAGCGAGCAATATCTTTTGCTGATGGACCAGCTGGAAACCGACAATGTTCGTCAGCATATAATTGATATTACAAGGAATGATGAAGCTCTATCCAGCTCATCTCATAATGATCACCACCGCGAAGTGCATTTACCTCAGAATGAAAATCAACTGAATGGCAGCACTGACATCCCTACTCATCAAACATCTTTGTTTTTTTCAAATAGATTTAATTATAGAGATTCCACAACAAGAAGAGTTGACGGGTATAGTCATCACAGAAGGGGGCCACTGGATTCTGGACTATGGATTTCTGTCGAGCTTGTTGTCACTGTTAGTCAGATCATAGCATCTATTGTTGTCTTGTCCCTATCTAGAAATGAACATCCCCAAGCCCCATTATTTGCATGGATTGTGGGTTATGCATCTGGTTGTGTTGCTTTTCTTCCTATTCTTTACTGGCAATATCGAAACTGTTGTCCAAGTGCTGAACAAGATACCTCTCAACAATTGCAAAGATCTTCTGGAAGGAACCCTTCAGAACCTTCTTATACTGCCATATCTGTTACTTATGCTACAGAATCAGCCACAAGAAGTGCTAGAATTCCTGGAGCCTTTAGTTCTAGGTTTAATGGATTTGTAGACCATTTCAAGATGGCCTTGGATTGCTTCTTTGCAGTTTGGTTTGTCATAGGCAATGTGTGGATCTTCGGAGGCCACGCTTCTCCTTCTGATGCTCCAAAATTGTATAGGTTATGTTTAGTGTTTCTTACCTTTAGCTGCATCGGATACGCCATGCCGTTTATACTTTGTGCCACAATTTGTTGCTGCCTGCCTTGCATAATTTCTGTTTGGGGCATTCATGAGGATTTGTCTCCAAACAGAGGAGCCTCAATAGAATCTATTAATGCTCTGCCAGTCTACAAGTTCAAATTGAAGCAAAATGAAAATGGAGATGTTCAGGACGCCAATACATCTATAGATGAAGGTGGAGTTCTAGCTGCTGGAACTGAAAAGGAGCGACTGATATTAGGTGAAGATGCTGTTTGTTGCATTTGCCTGGAAAAATATGTAGATGATGATGAGCTTCGGGAGTTACCATGTTTTCATGTCTTTCATGTAGAGTGTATTGACAAATGGTTAAAGATAAATGCATCCTGTCCTCTTTGTAAAATTGAAGTTTGTACAAGTAGTGAAGTGTCACTTTCAGCCGTGGACCCTAATCAGTAG 1248 0.4087 MDVTITERNSHAQSEQYLLLMDQLETDNVRQHIIDITRNDEALSSSSHNDHHREVHLPQNENQLNGSTDIPTHQTSLFFSNRFNYRDSTTRRVDGYSHHRRGPLDSGLWISVELVVTVSQIIASIVVLSLSRNEHPQAPLFAWIVGYASGCVAFLPILYWQYRNCCPSAEQDTSQQLQRSSGRNPSEPSYTAISVTYATESATRSARIPGAFSSRFNGFVDHFKMALDCFFAVWFVIGNVWIFGGHASPSDAPKLYRLCLVFLTFSCIGYAMPFILCATICCCLPCIISVWGIHEDLSPNRGASIESINALPVYKFKLKQNENGDVQDANTSIDEGGVLAAGTEKERLILGEDAVCCICLEKYVDDDELRELPCFHVFHVECIDKWLKINASCPLCKIEVCTSSEVSLSAVDPNQ* 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g2543 415 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 1 409 - -
Dod06g2543 415 CDD RING-H2_RNF111_like 355 398 - -
Dod06g2543 415 PANTHER PROTEIN, PUTATIVE-RELATED 1 409 - -
Dod06g2543 415 ProSiteProfiles Zinc finger RING-type profile. 356 397 IPR001841 -
Dod06g2543 415 SUPERFAMILY RING/U-box 346 402 - -
Dod06g2543 415 Pfam Ring finger domain 356 397 IPR001841 -
Dod06g2543 415 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 338 405 IPR013083 -
Dod06g2543 415 SMART ring_2 356 396 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g2543 Dod-Chr6 54542875 54548192 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g2543 1 407 C3H Transcription Factor Family AT1G80400 52.941 9.99e-151 431
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g2543 - - gmx:100819729 603.979
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod06g2543 06 54542875 54548192 Dod06g2543 06 54542875 54548192 ECH