Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g2542 ATGGCCAAAGAAGGTCTTGGACTTGAAATCACTGAGCTAAGGTTGGGACTACCCGGTGGGGAACCTATTAGAGTGATGAATAAGAATGAAAAGAAGAGGATGTTCTCGGAGATTGACGGTGGCGGCGGAGTTGATGGGGAGGAAAACGGCAGCTCCGGAGGCGGCCGGAAAACCGAGATGAAGGCTCAAGTGGTGGGGTGGCCTCCGGTGTGCTCTTACCGAATGAAGAACAGCATGAACGAGGCTTCAAAAGTGTATGTCAAGGTTAGCATGGATGGTGCTCCTTTCTTGCGGAAAATTGATTTGGGTATGCATAAGGGATACTCGGAGTTAGCCTTTGCCTTGGAGAAGCTCTTTGGTTGCTATGGAATGGGGGAAGCGTTGAAGGATGCCGACAATTGTGAACAAGTTCCCATTTATGAGGACAAAGAAGGTGACTGGATGCTGGTTGGAGATGTCCCTTGGGAAATGTTTATTGAGTCATGCAAGAGGCTGAGAATTATGAAGAGATCAGATGCGAAGGGATTCGGTCTGCAACCAAAAGGATCTTTAAAGGGTTTCATAGAAGGCGTGGCAAAGTGA 582 0.4828 MAKEGLGLEITELRLGLPGGEPIRVMNKNEKKRMFSEIDGGGGVDGEENGSSGGGRKTEMKAQVVGWPPVCSYRMKNSMNEASKVYVKVSMDGAPFLRKIDLGMHKGYSELAFALEKLFGCYGMGEALKDADNCEQVPIYEDKEGDWMLVGDVPWEMFIESCKRLRIMKRSDAKGFGLQPKGSLKGFIEGVAK* 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g2542 193 SUPERFAMILY CAD & PB1 domains 78 169 - -
Dod06g2542 193 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 4 176 IPR003311 GO:0005634|GO:0006355
Dod06g2542 193 Gene3D - 78 181 - -
Dod06g2542 193 MobiDBLite consensus disorder prediction 36 59 - -
Dod06g2542 193 ProSiteProfiles PB1 domain profile. 84 172 IPR000270 GO:0005515
Dod06g2542 193 PANTHER AUXIN-RESPONSIVE PROTEIN IAA6 4 176 - -
Dod06g2542 193 Pfam AUX/IAA family 56 176 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g2542 Dod-Chr6 54523597 54528352 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g2542 75 174 B3 DNA Binding Superfamily AT4G23980 37.000 1.90e-12 63.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Dod06g2542 AUX_IAA 4e-44 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g2542 K14484 - gmx:100791342 307.375
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod06g2542 06 54523597 54528352 Dod06g2542 06 54523597 54528352 ECH
Dod06g2542 06 54523597 54528352 Dod10g2041 10 42193370 42196774 PCT