Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g2504 ATGGTGCAATCAAAGAAATTCAGAGGTGTCAGGCAACGCCATTGGGGCTCATGGGTTTCTGAGATTCGTCACCCTCTATTGAAAAGGAGGGTGTGGCTTGGGACATTTGAGACAGCTGAAGCAGCAGCTAGAGCATATGATGAAGCAGCCATTTTGATGAGTGGAAGAAATGCCAAAACAAACTTCCCAGTCTCAGATAAACCAATACCAAATCACACATCTTCCTCCTCTTCTTCCTCTTCCTCTTCTTCTTCCACAACATTGTCTGCAGTTCTAAGTGCAAAGCTTAGGAAGTGTTGCAAGTCCCCTTCACCTTCCCTCACTTGTCTGAGGCTAGACACTGAGAATTCCCACATTGGGGTGTGGCAAAAGCGTGCTGGCCCTCGTTCTGACTCGAGCTGGATCATGATGGTTGAGTTGGAAAGGAAGAAGAATGTGGGGTCTTCTGATCATAATTCAGAAGAATTGGCAGTTCCTCAAGTGCAAGACAAGGTAATCAAACCTGAAGAAGGCAATGCCTTGGATGAGGAGCAGAGGATTGCCCTGCAGATGATTGAGGAACTTCTCAATAGGAATTAA 579 0.4611 MVQSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDEAAILMSGRNAKTNFPVSDKPIPNHTSSSSSSSSSSSSTTLSAVLSAKLRKCCKSPSPSLTCLRLDTENSHIGVWQKRAGPRSDSSWIMMVELERKKNVGSSDHNSEELAVPQVQDKVIKPEEGNALDEEQRIALQMIEELLNRN* 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g2504 192 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Dod06g2504 192 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Dod06g2504 192 SUPERFAMILY DNA-binding domain 6 65 IPR016177 GO:0003677
Dod06g2504 192 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Dod06g2504 192 PANTHER ETHYLENE RESPONSE FACTOR 1 192 - -
Dod06g2504 192 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 192 - -
Dod06g2504 192 MobiDBLite consensus disorder prediction 62 85 - -
Dod06g2504 192 Pfam AP2 domain 6 54 IPR001471 GO:0003700|GO:0006355
Dod06g2504 192 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700|GO:0006355
Dod06g2504 192 CDD AP2 5 65 IPR001471 GO:0003700|GO:0006355
Dod06g2504 192 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g2504 Dod-Chr6 54097432 54098724 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g2504 1 192 AP2-EREBP Transcription Factor Family AT1G15360 61.905 4.98e-80 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Dod06g2504 AP2 5.3e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g2504 - - gmx:100796962 274.633