Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Dod06g2464 | ATGGAGGAGACGGGGGAAAATTGGCCTTCGGATTCGGATTTGGACATCATGGGAGACAACGATTTCTGGTTTGATGATGAAGAATTCCCTTGTAATGATGATGAGACGGTGGATCCCATGATGGGTGAGACCAACAGAAAGAGGAGACAACGGGAACTCGAAGAGAGGTTATTGCTTGCACTTTCAGCCACCATACCTGGCGTGAAGAACAAGATGGACAATACTTCAATCTTGGACAAAGCTAGCAACCACGTGAAACAACTACAACAACGTGTGAGAGAGCTAGAACAACTAGTTGACTCCCGCAGTACTTGTACGAACAAAGGCTCCGCCTCTTGTGAGGTAAGCTCCAGTAATGGCAACTATGGACAAGACCATCATCATGGCACGCTTCCCGAGGTCAGAGCAAGGGTTTTGCAGAAGCAAGTACTCGTCGTAGTCCATTGTGGGAAACAAAAGGGCATTATGCTCAAAATACTGTCCCAGCTTGAAAGCCTTCATCTCTCAGTGCTCAATAGCAGTGTATTGCCATTCGGGAAATCCACTCTCAGCATTACCATTGTTGCTCAGGTACGTACATAA | 582 | 0.4674 | MEETGENWPSDSDLDIMGDNDFWFDDEEFPCNDDETVDPMMGETNRKRRQRELEERLLLALSATIPGVKNKMDNTSILDKASNHVKQLQQRVRELEQLVDSRSTCTNKGSASCEVSSSNGNYGQDHHHGTLPEVRARVLQKQVLVVVHCGKQKGIMLKILSQLESLHLSVLNSSVLPFGKSTLSITIVAQVRT* | 194 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Dod06g2464 | 193 | MobiDBLite | consensus disorder prediction | 104 | 125 | - | - | |
| Dod06g2464 | 193 | MobiDBLite | consensus disorder prediction | 29 | 49 | - | - | |
| Dod06g2464 | 193 | PANTHER | PROTEIN, PUTATIVE-RELATED | 44 | 191 | - | - | |
| Dod06g2464 | 193 | Coils | Coil | 78 | 98 | - | - | |
| Dod06g2464 | 193 | Gene3D | - | 46 | 122 | IPR036638 | GO:0046983 | |
| Dod06g2464 | 193 | SMART | finulus | 44 | 94 | IPR011598 | GO:0046983 | |
| Dod06g2464 | 193 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 46 | 101 | IPR036638 | GO:0046983 | |
| Dod06g2464 | 193 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 38 | 88 | IPR011598 | GO:0046983 | |
| Dod06g2464 | 193 | PANTHER | BHLH TRANSCRIPTION FACTOR | 44 | 191 | - | - | |
| Dod06g2464 | 193 | MobiDBLite | consensus disorder prediction | 104 | 128 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Dod06g2464 | Dod-Chr6 | 53369932 | 53376036 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Dod06g2464 | 46 | 191 | Basic Helix-Loop-Helix Transcription Factor Gene Family | AT2G22770 | 39.645 | 3.78e-25 | 97.8 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Dod06g2464 | - | - | aip:107616596 | 185.267 |