Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g2462 ATGGAGGACTCGTGGGACTATTGGCTCTCTCATTTGGGAATGAGTGACCATGCTGCTGCTACGACTACCACCAGTCCCGCAAGCAGTTTATCCTTTGAAGAGATCATAAGCTTGAAGGGTAAGTCTTGTGATAATTGCTCCAATAATGTTGAGGAGGCAGAAAAGGATAAGACATGGAAAAGGGGTTTGGAGAACAGTGACTTGGAAGAAAGGGAGAAGAGAGGAGCAAAGAAGGCAAGGGGCTCTTCTGAGGCACTGGATCACGTAATGTCGGAGAGGAGGAGGAGGAAGGAAATGGCAGAGAGGTTCATAGCACTTTCAGCTACTATTCCTGGCTTGAAGAAGATCGACAAGGCATCTGTACTTCAGGAAGCCATTAATTACGTGAAACAACTTCAACAACGCATAGCAGAGCTGGAACAAGAGACTAGTAACAAGAAAAGCAAAGAATCATTGATTGTCACGAAATCACACCTTTGTTCGCCTTCATGTGAAACAAACCATGATCATGAAGACTACGATGTAGCCAGTGAAGTGCTCCCTGAAGTGGAAGCAAGAGAGTTAGAGAAGGAAGTGCTCATAAGAATCCATTGTGAGAAACGAAAGGGCATCATGCTCAAGCTATTGGCTATACTAGAAAATAATCATCTCTCTGTAGCAAGTAGCAGCTTATTGCCATTTGGAAACTCTGCTCTCAACATTATCATTATTGCCCAGATGACCGAGGAATTCAGCTTAACAGTGAACGATTTGGTGAAGACCTTGAAGAAGTATCTTGTGACGCTTATGAGATGCAATAATTGTGGCCCATGCTAG 816 0.4387 MEDSWDYWLSHLGMSDHAAATTTTSPASSLSFEEIISLKGKSCDNCSNNVEEAEKDKTWKRGLENSDLEEREKRGAKKARGSSEALDHVMSERRRRKEMAERFIALSATIPGLKKIDKASVLQEAINYVKQLQQRIAELEQETSNKKSKESLIVTKSHLCSPSCETNHDHEDYDVASEVLPEVEARELEKEVLIRIHCEKRKGIMLKLLAILENNHLSVASSSLLPFGNSALNIIIIAQMTEEFSLTVNDLVKTLKKYLVTLMRCNNCGPC* 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g2462 271 Pfam Helix-loop-helix DNA-binding domain 88 133 IPR011598 GO:0046983
Dod06g2462 271 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 21 262 - -
Dod06g2462 271 PANTHER BHLH TRANSCRIPTION FACTOR 21 262 - -
Dod06g2462 271 Coils Coil 122 149 - -
Dod06g2462 271 Gene3D - 83 153 IPR036638 GO:0046983
Dod06g2462 271 SMART finulus 89 138 IPR011598 GO:0046983
Dod06g2462 271 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 83 132 IPR011598 GO:0046983
Dod06g2462 271 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 88 148 IPR036638 GO:0046983
Dod06g2462 271 MobiDBLite consensus disorder prediction 53 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g2462 Dod-Chr6 53329375 53334928 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g2462 69 263 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 39.614 2.05e-42 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dod06g2462 HLH 4.9e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g2462 - - gmx:100778916 270.011