Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g2457 ATGGAGGGGTCATGGGAGAACTGGCATCTTGAAATGGAAATGGATGATGGCAATGATTTCCCAGACCAGTGCCACTCTTATGATGATGAAGAGTTCCTAAAAGACATCCTGTTACAGCCATCTTTCTCTTCAGAAAGTGAGAGTGATCAATATCATCACTCCCTTCACGCTACTACCAATTCTTACTCCACTCTCCAATACCACAACAACAACAATCCCACATCCACCGTTGGATCAGATGTGCCAGTGCTGGATCAAATGGCTGGGAGTGATAGCTCCAACTCCTTAGTGTCTCAACAAAATACTTCCAAGAATGACAACAAAAAGAGGCCTCGTAGATCCTCTTCTCCAAGGACATTCATTTTGTCCTTTGGTAACTCAACAATGACCCCATCTACCCTTGAACCCAAACCCTCCCCCAAAAATCATGGGCAGTTGTTAAAGGGTAGTAAGGGAATTACACGTTCTTCATCTAATCATTCTCCTAAGTTACCATCAAAACGGGCCATGGCTGAACCAGGAGAGATGAGGGATGGTGATAATAATAACCAAGGAGCAAAGAAGGCAAGAAACACTTCTCAGAGTATGGATCATATAATGGCAGAGAGGAAGAGGAGGCAGGAACTCACAGAGAGGTTCATAGCACTTTCAGCAACAATTCCTGGATTAAGCAAGACGGACAAGGCATCTATACTTCGAGCAGCAATCGATTACGTGAAACAGCTCCAAGGACGTGTACAAGAGCTAGAAAAACAAGACAAATCAAAGAGGAGGGTGGAGTCAGTGATATTGGTAAGGAAACCCGATGCAAATGAAGACACCATAACCACATCAAGTGAAACAAGCTCTGATCATCATCATGAGTGTGGCACCTTACCTGAGATTGAAGCAAGAGTCATGGGTAAGGATGTTCTCATTGAGATACACTGTGAGAAAGGAAATGGTATTGAGCTCAAAATACTTGACATGCTTGAAAATCTTCATCTTTGTGTCACCGGTAGCAGTGTCCTGCCATTTGGCAATTCCGCTCTTGGGATCACTATCATCGCTCAGATGGGTGATGCCTACAAAATGACAGCGAATGATCTAGTGAAAAATCTTAAGGAAGTACTCATGAAGTCACCCGGGGCTGCAACAGTGATCCGTACTAGTGTATCGAGCAAAGGTGTAGCTTATGGACTTGGAAGCTTTGATTTCGGTGCTCTTTTTAGTTTCGCTCGTTTGCTTTTTCATAAACTCCAGGGTAACATGCATTTTACTCGGTAA 1266 0.436 MEGSWENWHLEMEMDDGNDFPDQCHSYDDEEFLKDILLQPSFSSESESDQYHHSLHATTNSYSTLQYHNNNNPTSTVGSDVPVLDQMAGSDSSNSLVSQQNTSKNDNKKRPRRSSSPRTFILSFGNSTMTPSTLEPKPSPKNHGQLLKGSKGITRSSSNHSPKLPSKRAMAEPGEMRDGDNNNQGAKKARNTSQSMDHIMAERKRRQELTERFIALSATIPGLSKTDKASILRAAIDYVKQLQGRVQELEKQDKSKRRVESVILVRKPDANEDTITTSSETSSDHHHECGTLPEIEARVMGKDVLIEIHCEKGNGIELKILDMLENLHLCVTGSSVLPFGNSALGITIIAQMGDAYKMTANDLVKNLKEVLMKSPGAATVIRTSVSSKGVAYGLGSFDFGALFSFARLLFHKLQGNMHFTR* 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g2457 421 Gene3D - 191 263 IPR036638 GO:0046983
Dod06g2457 421 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 1 374 - -
Dod06g2457 421 SMART finulus 199 248 IPR011598 GO:0046983
Dod06g2457 421 PANTHER BHLH TRANSCRIPTION FACTOR 1 374 - -
Dod06g2457 421 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 193 242 IPR011598 GO:0046983
Dod06g2457 421 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 196 256 IPR036638 GO:0046983
Dod06g2457 421 MobiDBLite consensus disorder prediction 64 104 - -
Dod06g2457 421 MobiDBLite consensus disorder prediction 64 196 - -
Dod06g2457 421 Pfam Helix-loop-helix DNA-binding domain 197 243 IPR011598 GO:0046983
Dod06g2457 421 MobiDBLite consensus disorder prediction 116 139 - -
Dod06g2457 421 Coils Coil 232 259 - -
Dod06g2457 421 MobiDBLite consensus disorder prediction 149 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g2457 Dod-Chr6 53295348 53299827 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g2457 154 371 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 46.396 7.71e-48 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dod06g2457 HLH 2.7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g2457 - - gmx:100778376 382.489