Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g2448 ATGGCTAGACCCCAACAACGCTATAGAGGTGTCCGCCAAAGGCATTGGGGCTCTTGGGTCTCTGAAATTCGCCACCCTTTATTGAAGACTAGAATATGGCTAGGAACATTTGAAACTGCAGAGGATGCAGCAAGAGCATATGATGAAGCAGCTAGGCTCATGTGTGGACCAAAAGCAAGAACCAATTTCCCATACAACCCAAATGTGCCACAATCATCTTCATCAAAGCTACTATCTGCTACTTTGACAGCAAAGTTACACAAGTGTCACATGGCCTCACTTTCCCTTCAAATGGCCAAGCAGAAAGCACCACCACAGAAAGAGCCTAAACCATCATCATCATCATCATCATCATCATCATCATCATCAAATAGGTGCAATACTTCATTTGCATCTGGCAATAATGCCATTGCTGGAACAAGCTCTAATGAGGGTGGTTTTGGATGGCCAGCGAATAGACATGATGAGAAGTTACATTGGTTTGAAGAAGGGAGTAATTGGGGTGGCTTTGAAGGCCAAGTTGAAGTTGCACAACAGCAATTTCAACCAGTACTTGAAGATGATCATATAGAGCAAATGATTCAGGAGTTGCTTGATTGTGGATCAATTGAACTTTGCTCTATTGGTTCGGATTAG 636 0.4308 MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKARTNFPYNPNVPQSSSSKLLSATLTAKLHKCHMASLSLQMAKQKAPPQKEPKPSSSSSSSSSSSSNRCNTSFASGNNAIAGTSSNEGGFGWPANRHDEKLHWFEEGSNWGGFEGQVEVAQQQFQPVLEDDHIEQMIQELLDCGSIELCSIGSD* 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g2448 211 MobiDBLite consensus disorder prediction 97 149 - -
Dod06g2448 211 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700|GO:0006355
Dod06g2448 211 CDD AP2 6 66 IPR001471 GO:0003700|GO:0006355
Dod06g2448 211 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Dod06g2448 211 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Dod06g2448 211 MobiDBLite consensus disorder prediction 107 147 - -
Dod06g2448 211 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
Dod06g2448 211 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 207 - -
Dod06g2448 211 SUPERFAMILY DNA-binding domain 7 66 IPR016177 GO:0003677
Dod06g2448 211 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
Dod06g2448 211 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
Dod06g2448 211 PANTHER ETHYLENE RESPONSE FACTOR 1 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g2448 Dod-Chr6 53196463 53197806 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g2448 1 208 AP2-EREBP Transcription Factor Family AT5G25190 57.212 3.26e-73 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Dod06g2448 AP2 9.7e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g2448 - - gmx:100777851 264.233