Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g2398 ATGGACAAGTACGAGAAGCTGGAGAAGGTTGGGGAAGGCACATATGGGAAGGTATACAAGGCCAAGGAGAAGGCCACTGGGCAGCTGGTTGCCCTGAAGAAGACCCGTTTGGAGATGGATGAGGAGGGTGTCCCTCCAACTGCCCTTAGAGAGGTCTCCCTCTTGCAAATGCTATCCCAATCCATCTACATTGTGCGCCTCCTCAATGTGGAGCATGTGGACAAGGTCCCAAAATCAGCCCCACCTTCTGCTGCCTCAAAGCCCCTCCTCTACCTTGTCTTTGAGTACCTTGACACTGACCTCAAGAAGTTCATTGATTCCCACCGCAAGGGCACCAACCCGAGACCCCTCCCTCCTTCCCTCATCCAGAGCTTCCTCTTCCAGCTCTGCAAGGGTGTTGCACACTGCCACAGCCACGGCGTCCTCCACCGCGACCTCAAGCCCCAGAACCTTCTCCTTGACCAGCAGAAGGGGATTCTCAAGATTGCTGACCTTGGACTCGGACGAGCTTTCACTGTCCCTCTCAAGAGCTACACTCATGAGATTGTCACCCTATGGTACAGAGCACCTGAGGTCCTGCTGGGATCTACCCATTACTCCACTGGGGTTGACATGTGGTCCGTCGGCTGCATCTTTGCTGAAATGGTGAGAAGGCAAGCTTTGTTTCCTGGGGATTCTGAATTCCAACAGCTTCTTAACATATTCAAGGTATTGGGAACTCCAACTGAGGAGCAGTGGCCAGGAGTAACTTCTCTTCGTGATTGGCATGTCTACCCGAAGTGGGAACCTCAGAACTTGGCAAGGGCTGTACCTTCATTGGAACCTGAAGGAGTAGACCTTCTCACGAAAATGCTCAAGTATAATCCTGCTGAGAGAATCTCTGCCAAGGCAGCACTTGATCACCCATACTTTGACAGCCTGGACAAGTCGCAATTTTAA 939 0.5218 MDKYEKLEKVGEGTYGKVYKAKEKATGQLVALKKTRLEMDEEGVPPTALREVSLLQMLSQSIYIVRLLNVEHVDKVPKSAPPSAASKPLLYLVFEYLDTDLKKFIDSHRKGTNPRPLPPSLIQSFLFQLCKGVAHCHSHGVLHRDLKPQNLLLDQQKGILKIADLGLGRAFTVPLKSYTHEIVTLWYRAPEVLLGSTHYSTGVDMWSVGCIFAEMVRRQALFPGDSEFQQLLNIFKVLGTPTEEQWPGVTSLRDWHVYPKWEPQNLARAVPSLEPEGVDLLTKMLKYNPAERISAKAALDHPYFDSLDKSQF* 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g2398 312 SMART serkin_6 4 304 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dod06g2398 312 ProSitePatterns Serine/Threonine protein kinases active-site signature. 141 153 IPR008271 GO:0004672|GO:0006468
Dod06g2398 312 Pfam Protein kinase domain 4 304 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dod06g2398 312 PANTHER CYCLIN-DEPENDENT KINASE B1-2 1 312 - -
Dod06g2398 312 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Dod06g2398 312 SUPERFAMILY Protein kinase-like (PK-like) 1 307 IPR011009 -
Dod06g2398 312 ProSiteProfiles Protein kinase domain profile. 4 304 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dod06g2398 312 Gene3D Phosphorylase Kinase; domain 1 1 98 - -
Dod06g2398 312 PANTHER CELL DIVISION PROTEIN KINASE 1 312 - -
Dod06g2398 312 Gene3D Transferase(Phosphotransferase) domain 1 100 311 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g2398 Dod-Chr6 52506873 52510408 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g2398 1 312 Core Cell Cycle Gene Families AT3G54180 84.615 0.0 546
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-Pl Dod06g2398 Pkinase 1.6e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g2398 K07760 - gmx:100805119 569.311