Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g2397 ATGGCGAAGATTTCGCAGAAAAAGAGCCTCAAGAACACTACCACTAGTGGCAGCTGCGCCAAAAGCACTGGCACACCATCGAAGGTAGTAGCGAAGCGAAAACGCAAAAGCATCCCAGAAGGCTCATCACCTCCACAACGAAGCTCAATCTACCGGGGTGTCACAAGGCATCGATGGACTGGCCGATATGAGGCTCATTTGTGGGATAAGAATGGCTGGAATGAGTCACAGAGCAAGAAAGGAAGACAAGGGGCATATGATGATGAAGAAGCCGCAGCACGTGCCTATGACTTGGCAGCATTGAAGTACTGGGGCCAAGACACCATCCTCAATTTTCCATTATCAAATTATCAAGAGGAGCTCAAGGATATGGAGGGCCAGTCGAAAGAAGAATACATTGGATCCTTAAGAAGAAAAAGCAGTGGGTTCTCTAGAGGAGTCTCAAAATACAGAGGCGTAGCACGACACCACCACAATGGACGATGGGAAGCTCGAATTGGCAGGGTCTTCGGCAACAAATATCTATATCTTGGAACTTACGGTGCATTCGCGCATGGAAATAGTATTTAA 570 0.4754 MAKISQKKSLKNTTTSGSCAKSTGTPSKVVAKRKRKSIPEGSSPPQRSSIYRGVTRHRWTGRYEAHLWDKNGWNESQSKKGRQGAYDDEEAAARAYDLAALKYWGQDTILNFPLSNYQEELKDMEGQSKEEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYGAFAHGNSI* 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g2397 189 SUPERFAMILY DNA-binding domain 49 115 IPR016177 GO:0003677
Dod06g2397 189 MobiDBLite consensus disorder prediction 1 25 - -
Dod06g2397 189 ProSiteProfiles AP2/ERF domain profile. 50 113 IPR001471 GO:0003700|GO:0006355
Dod06g2397 189 MobiDBLite consensus disorder prediction 1 53 - -
Dod06g2397 189 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 181 - -
Dod06g2397 189 SUPERFAMILY DNA-binding domain 148 182 IPR016177 GO:0003677
Dod06g2397 189 Gene3D AP2/ERF domain 148 183 IPR036955 GO:0003700|GO:0006355
Dod06g2397 189 Gene3D AP2/ERF domain 50 116 IPR036955 GO:0003700|GO:0006355
Dod06g2397 189 PRINTS Ethylene responsive element binding protein signature 51 62 IPR001471 GO:0003700|GO:0006355
Dod06g2397 189 PRINTS Ethylene responsive element binding protein signature 95 115 IPR001471 GO:0003700|GO:0006355
Dod06g2397 189 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 181 - -
Dod06g2397 189 SMART rav1_2 50 119 IPR001471 GO:0003700|GO:0006355
Dod06g2397 189 ProSiteProfiles AP2/ERF domain profile. 149 189 IPR001471 GO:0003700|GO:0006355
Dod06g2397 189 Pfam AP2 domain 50 105 IPR001471 GO:0003700|GO:0006355
Dod06g2397 189 Pfam AP2 domain 148 181 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g2397 Dod-Chr6 52488818 52491358 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g2397 46 180 AP2-EREBP Transcription Factor Family AT5G57390 69.565 7.67e-66 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Dod06g2397 AP2 4.8e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g2397 K09285 - rcu:8280276 293.123