Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g2387 ATGGATGGTATTCATGGGGGTGATTCTCGGGTACACATGAGTGATGGACAGCATCCTATGCACATGTCGTATGTGCAAGAACATGACCATCATGGATTGCACCATATGAGTAATGGGAATGGGATGGATGATGATCAGAATAATGGCAGTGATGCTAACTGTGGTGGGAGTGAGAGTGTGGAAGGCGAAGTCCCCTCCAACCATGGAAATCTGACTGAGAATCACGCTGCAATAATAGATCAAGGGAGTGATGTTGGGGATCAGCTTACATTGTCTTTTCAGGGCCAAGTTTATGTCTTTGACTCTGTGTCACCTGAAAAGGTTCAAGCTGTACTGCTACTATTGGGAGGCCGTGAAGTACCTCCGACTATGCCTACCATCCCAATATCTCAGCAAAATAATCGGGGATTTTCTGCTACTCCACAAAAATTCAGTGTCCCCCAGAGATTAGCCTCACTGCTGAGATTTCGTGAGAAGCGGAAAGAACGAAATTTTGACAAAAAAATCCGTTATACTGTTCGTAAAGAAGTAGCATTAAGGATGCAAAGAAATAAAGGTCAGTTTACATCTTCTAAGCCCAATCATGATGAATCTGCATCAGGTGCAGCAAACTGGGGGACAAATGAAGGCTGGATGTCAGACAATAATGGATCCCAACAGCAAGATATTGTTTGTCGGCACTGTGGCACTAGTGAGAAATGCACACCAATGATGCGACGTGGACCTGAAGGGCCAAGAACCCTCTGCAATGCTTGTGGACTTATGTGGGCAAATAAGGGAACTCTTAGGGACCTGTCAAGGGCAGCATCCATGCCTGCACATAATTCTTCATTAAACAAGAATGAGAATAAAAATTTTGAGGCCAACCAGATAGTCCAAACAGTGGCAGGAGATGTTGATGATTCATCATGA 912 0.4441 MDGIHGGDSRVHMSDGQHPMHMSYVQEHDHHGLHHMSNGNGMDDDQNNGSDANCGGSESVEGEVPSNHGNLTENHAAIIDQGSDVGDQLTLSFQGQVYVFDSVSPEKVQAVLLLLGGREVPPTMPTIPISQQNNRGFSATPQKFSVPQRLASLLRFREKRKERNFDKKIRYTVRKEVALRMQRNKGQFTSSKPNHDESASGAANWGTNEGWMSDNNGSQQQDIVCRHCGTSEKCTPMMRRGPEGPRTLCNACGLMWANKGTLRDLSRAASMPAHNSSLNKNENKNFEANQIVQTVAGDVDDSS* 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g2387 303 Pfam GATA zinc finger 225 261 IPR000679 GO:0006355|GO:0043565
Dod06g2387 303 ProSiteProfiles CCT domain profile. 149 191 IPR010402 GO:0005515
Dod06g2387 303 MobiDBLite consensus disorder prediction 186 205 - -
Dod06g2387 303 ProSiteProfiles GATA-type zinc finger domain profile. 219 275 IPR000679 GO:0006355|GO:0043565
Dod06g2387 303 SMART GATA_3 219 272 IPR000679 GO:0006355|GO:0043565
Dod06g2387 303 Pfam tify domain 88 116 IPR010399 -
Dod06g2387 303 SMART tify_2 82 117 IPR010399 -
Dod06g2387 303 ProSitePatterns GATA-type zinc finger domain. 225 252 IPR000679 GO:0006355|GO:0043565
Dod06g2387 303 MobiDBLite consensus disorder prediction 40 55 - -
Dod06g2387 303 MobiDBLite consensus disorder prediction 31 70 - -
Dod06g2387 303 CDD ZnF_GATA 224 266 IPR000679 GO:0006355|GO:0043565
Dod06g2387 303 PANTHER GATA TRANSCRIPTION FACTOR 28 5 290 - -
Dod06g2387 303 Pfam CCT motif 149 191 IPR010402 GO:0005515
Dod06g2387 303 PANTHER GATA TRANSCRIPTION FACTOR 28 5 290 IPR045280 GO:0006355
Dod06g2387 303 ProSiteProfiles Tify domain profile. 82 117 IPR010399 -
Dod06g2387 303 Gene3D - 215 283 IPR013088 GO:0006355|GO:0008270
Dod06g2387 303 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 220 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g2387 Dod-Chr6 52392669 52397923 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g2387 1 302 Tify Gene Family AT1G51600 62.215 3.32e-136 386
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Dod06g2387 CCT 3.8e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g2387 - - pvu:PHAVU_008G254600g 511.146
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod06g2387 06 52392669 52397923 Dod06g2387 06 52392669 52397923 ECH