Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g2346 ATGGGAGAGAGACTCCTTCCATTTCGTAATAATAGATTTGTGTGCATAAGTATCAATGGAACACCTTACGCTGGGCCTCAAACCACGGAGAAGAAACCACCTCAGACGAATAGAAAGCCTTCTCTGCAAATCTCAGTCCCGAAGACGACCGACTGGCTCAAGTCCGGAGAACCAGAGGAGGAGGAGGAGAACCGCACTAAGAGCGAAGAGAAGAAGAAGCACTACACAGGTGTCCAACAGAGACGGTGGGGGAAGTTTGCGGCGGAGATCCGTGAACCGAACAGGCGCGGGTCAAGTGTGTGGCTGGGGACGTTCGACACCGCTATTGAAGCCGCCAAGGCCTACGACCGCGCCGCCTTCAAGCTCCGCGGCGCCAAGGCCATCCTCAACTTCCCGCTCGAAGCCGGTGCAGATGACCGAAAACGGCGCCGTGAGGAGGAGGCGGAGGTGGAGGAGGTGGAACCGGTGAAGAGGGAAAAGACGGAGGAATCGGAGGCTAGGCGTATACGGGAAAAATCTTCCGCTAATGGTAAGGTCATGACTAACAATAATACTAGTACAAGCAAAGCAGCAGCAGCATCAGCATCTCATGCCAATGACCAATCGGTGCCTAATTGTGATAATTTTAATGAGGACCCAGATTTGTGTTTCGATGATAATTTGTTTATTCAAGATCAGGGGTGTGGTATTGATTCTCTGCTAGATGATGTTCGTTGTGTTCCCACAATGGATAATTAG 738 0.5136 MGERLLPFRNNRFVCISINGTPYAGPQTTEKKPPQTNRKPSLQISVPKTTDWLKSGEPEEEEENRTKSEEKKKHYTGVQQRRWGKFAAEIREPNRRGSSVWLGTFDTAIEAAKAYDRAAFKLRGAKAILNFPLEAGADDRKRRREEEAEVEEVEPVKREKTEESEARRIREKSSANGKVMTNNNTSTSKAAAASASHANDQSVPNCDNFNEDPDLCFDDNLFIQDQGCGIDSLLDDVRCVPTMDN* 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g2346 245 SMART rav1_2 74 138 IPR001471 GO:0003700|GO:0006355
Dod06g2346 245 MobiDBLite consensus disorder prediction 53 77 - -
Dod06g2346 245 ProSiteProfiles AP2/ERF domain profile. 74 132 IPR001471 GO:0003700|GO:0006355
Dod06g2346 245 MobiDBLite consensus disorder prediction 19 50 - -
Dod06g2346 245 Gene3D AP2/ERF domain 73 134 IPR036955 GO:0003700|GO:0006355
Dod06g2346 245 SUPERFAMILY DNA-binding domain 74 133 IPR016177 GO:0003677
Dod06g2346 245 MobiDBLite consensus disorder prediction 175 201 - -
Dod06g2346 245 MobiDBLite consensus disorder prediction 19 79 - -
Dod06g2346 245 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 6 26 172 - -
Dod06g2346 245 MobiDBLite consensus disorder prediction 138 201 - -
Dod06g2346 245 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 26 172 - -
Dod06g2346 245 Pfam AP2 domain 74 124 IPR001471 GO:0003700|GO:0006355
Dod06g2346 245 MobiDBLite consensus disorder prediction 138 174 - -
Dod06g2346 245 PRINTS Ethylene responsive element binding protein signature 114 134 IPR001471 GO:0003700|GO:0006355
Dod06g2346 245 PRINTS Ethylene responsive element binding protein signature 75 86 IPR001471 GO:0003700|GO:0006355
Dod06g2346 245 CDD AP2 73 132 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g2346 Dod-Chr6 51729398 51734296 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g2346 38 164 AP2-EREBP Transcription Factor Family AT5G47230 60.000 2.33e-44 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dod06g2346 AP2 2.5e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g2346 K09286 - gmx:100808173 164.466