Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g2283 ATGGAAAACCAGTTCTTTCTAAATGGTGGGGTGTCCCATCCATTTCACTTTGAAACTCCACAATCACATCTTTCTTCAATGCCAACTTGGCAGCATCATCCACTCTCATCATCATCATCAGCCATGGAAATTCAACATCCAACAGCCCTGAACTGTTCACCTGACCAAACACAGGACTGCTTCTACAACCCAACAGATCATCATAGCCTTCACTTTGATTCAGCACTGAGTTCAATGGTCTCATCCCCAGCAGCATCAAACTCCAACATCCCAAATGAGAATTTTGTGATCAGGGAACTGATAGGGAAATTGGGAACCATTGGAAGCTCTGGTGAGATCTCACCACATTCTCAGCCTTTAGTTTATAGCACCCCTTTGAGCTCACCTCCAAAACTGAACATTCCACCAGGGATGAGCAACCACTTGGTGAAAGAGATCAACATTCCCAGTTTGGGAGGGAAACCAATGGCTCTGAATTCAACTGTTGCTGAATTCTCTGCTGATCCTGGCTTTGCTGAGAGGGCTGCAAAGTTCTCCTGCTTTGGAAGCAGGAGTTTCAATGGGAGGACTAACCAAATTGTGGTGAACAATGCCGAGCTAACTCAAAGATCTACAGCTGCTATTCCGGTTATGGAGAATGGGAAGATGCCAAGAGTCTCAAGTAGCCCATCACTGAAAACACTTGGATCTCAAATGGGTGCCATGGAGAACAAGAATTCTCCACTGCAAGAGAGAATGGATGTTGCCAATTCTCAGGAGGAATCCACAATCTCAGAGCAGACACCAAACGGGGAAGCAGGTGTTAGACCTTCCCCTGACATGAATTCCAGGAAAAGGAAAGCTTCTTCCAAAGGAAAAGCCAAAGAGGCTTCAACCCCTTCCAATCCTACCAAGGGTGTTGAAGGTAGTGAAGACTCGAATGCAAAGCGCAGCAAGCCAAATGAGGGTTGTGAGGGAAATGAAAACAATGGCACTGTGAAGGTAGAGGAAGATTCCAAAGGTGGTGCTAGTAACGCTGCAGGGGAAGAGAAACAGAACAAGAGCAACTCAAAACCGCCTGAGCCTCCAAAAGATTACATTCATGTCAGAGCAAGAAGAGGTCAAGCCACTGACAGCCATAGCCTTGCAGAACGTGTACGGAGGGAGAAAATCAGTGAGAGGATGAAGCTTCTCCAAGATCTTGTACCAGGTTGCAATAAGGTCACTGGTAAAGCACTTATGCTGGATGAAATTATAAACTATGTTCAGTCATTGCAGCGTCAAGTTGAGTTCCTGTCTATGAAACTGGCTTCTGTTAACACAAGGATGGATTTAAGTATTGAGAGCCTTATCCCAAAAGATATAATTCAATCAAATCATTCTTTGGCACACCCAATTTTCCCAATAGATTCCTCAGCAACAGCCTTTTATGGGCAACAATCCCAGCAAAACCAAACTATCCACAATAACATTCCTAATGGAACTGTGTCCCACAACTCAGTGGACCCATTAGATTCTTCTTTGTGCCAAAATCTTGGATTGCAGTTACCTCCCCTAAATGGATTCAATGAAGCTGGATCTCAGTATCCATTAACATTCTGTGAGGATGACCTCCACACCATAGTTCAGATGGGATTTGGACAAACTGCAAACAGGAAGACACCAATACAATCCCCAAGTTTCAACGGTTCAAATCAAGTAGCACAGATGAAAGTTGAGTTCTGA 1704 0.4442 MENQFFLNGGVSHPFHFETPQSHLSSMPTWQHHPLSSSSSAMEIQHPTALNCSPDQTQDCFYNPTDHHSLHFDSALSSMVSSPAASNSNIPNENFVIRELIGKLGTIGSSGEISPHSQPLVYSTPLSSPPKLNIPPGMSNHLVKEINIPSLGGKPMALNSTVAEFSADPGFAERAAKFSCFGSRSFNGRTNQIVVNNAELTQRSTAAIPVMENGKMPRVSSSPSLKTLGSQMGAMENKNSPLQERMDVANSQEESTISEQTPNGEAGVRPSPDMNSRKRKASSKGKAKEASTPSNPTKGVEGSEDSNAKRSKPNEGCEGNENNGTVKVEEDSKGGASNAAGEEKQNKSNSKPPEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEFLSMKLASVNTRMDLSIESLIPKDIIQSNHSLAHPIFPIDSSATAFYGQQSQQNQTIHNNIPNGTVSHNSVDPLDSSLCQNLGLQLPPLNGFNEAGSQYPLTFCEDDLHTIVQMGFGQTANRKTPIQSPSFNGSNQVAQMKVEF* 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g2283 567 MobiDBLite consensus disorder prediction 208 359 - -
Dod06g2283 567 PANTHER BHLH TRANSCRIPTION FACTOR 2 560 - -
Dod06g2283 567 MobiDBLite consensus disorder prediction 217 265 - -
Dod06g2283 567 Coils Coil 415 435 - -
Dod06g2283 567 MobiDBLite consensus disorder prediction 287 302 - -
Dod06g2283 567 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 366 437 IPR036638 GO:0046983
Dod06g2283 567 SMART finulus 374 424 IPR011598 GO:0046983
Dod06g2283 567 Pfam Helix-loop-helix DNA-binding domain 372 419 IPR011598 GO:0046983
Dod06g2283 567 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 2 560 IPR024097 GO:0006355
Dod06g2283 567 Gene3D - 365 440 IPR036638 GO:0046983
Dod06g2283 567 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 368 418 IPR011598 GO:0046983
Dod06g2283 567 CDD bHLH_AtBPE_like 358 443 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g2283 Dod-Chr6 49799907 49803414 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g2283 1 521 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G07340 43.315 8.60e-111 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dod06g2283 HLH 4.5e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g2283 - - gmx:100812081 753.051