Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g2224 ATGGCGTCCAAAGGTCCCAGGTCTAAGATTGATCATGAATCTAGAGCTAAACGGCAGAAGGCACTTGAAGCTCCAAGGGAGCCTCGGCGTCCCAAAACTCATTGGGATCATGTCTTAGAAGAGATGGTGTGGTTATCAAAGGACTTTGAGTCAGAGAGGAAATGGAAACTAGCTCAGGCAAAGAAAGTTGCTTTAAGAGCCAGCAAAGGCATGTTAGATCAGGCTACAAGAGATGAAAAGAAGATGAAGGAAGAAGAGTCTCGCTTAAGAAAAGTTGCACTAAATATTTCCAAGGATGTTAAGAAATTCTGGACGAAAATAGAAAAGCTGGTTCTTTACAAGCATCAAATGGAGCTTGATGAGAAGAAGAAAAAGGAGCTTGACAAACAGCTTGAGTTTCTTTTAGGGCAAACTGAGAGGTACTCATCAATGCTGGCAGAAAATCTTGTGGATGCTCATAAACCAATAGAGAGAAACTCTGCAGAGCATCAAATAAGTACTCAATACAAGGATGTAAATGTAGACGTTGTTCATGAACCCAAGGAAGCTAATGTTGAGAATCAATTAGATGCACCTGATGATGATGAGGAATATGATGTACAATCTGATGATGAATCAGAAGATGATGAAGAAACCCTTGAGGAAGATGAGGCTCTTATAACTAAAGAAGAAAGGCAAGAGGAGTTGGCAGCTTTGCATGATGAAATCAATCTTCCAATTGAGGAGTTACTCAGACGTTATGCTGATGGGAAAGGAGAATCAGCTAGTAAAGAAAGTAGTTCAGAGCATGATGAAGATGGTGGTAAAATAGTTAGAACTGGTAATGAAAATGGAGATGGTATTTTATATGCCAATGAAATTTGCACCAGTGACTTAAGCATGGTCCCTGGTCGACGTTGTGGTGAAAGTAATGGTGATGTAGCTACAGCACTAAACAATATATCTCAAGATGAGAATCATCAATCTGGAGATCTAAAGGAGGTTCCCAGTGAGGTGGCCAATGAACATATTGCATATGATTTTACTGATGAAGAGGATGATGACTTCTTACTTGGTACAGAAGATAAGCTTCATTTCAATGATCAGGATGATGAAACAACCTTGTCCGAGGAGGAAAAACTGGAGAAAGTGGATGCAATTGATCCCAAGGATGAGATTGCACTATTGCAAAAGGAGAGTGACATGCCTGTTGAGGAACTCCTTGCAAGGTATAAAAAGGATCTGAGTGATGACGAAGGGGAAGATGATTCTGATTATGCTTCTGCTTTATCAGATGAACATTTGGATTCTCCTGTCTATGAAGATGCTGGACAGAAGGATCCTGCTGTTCCTATGGATGAAGATATCAAGTCTGAGCACCATGCTGCTGTAGAGTCTCAGGTAGAAGAGCAATGGGAACCACCGCAAGAAACTACAGAAAAAAGAGAGAGTGAGCATATAATTGCTGATGCAGCTGCTGCTGCAAGATCAGCACAACCTACTGGAAACACCTTCTCCACAACTAAAGTGCGTACAAAGTTCCCTTTTCTACTCAAGTACTCTCTTCGTGAGTATCAACACATTGGATTGGATTGGCTTGTCACGATGTATGAAAAAAGATTGAATGGAATTTTGGCAGATGAAATGGGGCTTGGAAAAACAATTATGACTATAGCTTTGCTTGCACATCTTGCTTGTGAAAAGGGAATTTGGGGTCCACATCTAATTGTCGTGCCAACTAGCGTAATGCTTAACTGGGAAACTGAATTTCTGAAATGGAGTCCTGCTTTTAAAATTTTAACTTATTTTGGAAGTGCGAAGGAGCGAAAACATAAAAGACAGGGATGGTTGAAACCAAACTCTTTTCATGTGTGTATAACAACTTACAGATTAGTCATTCAGGATTCCAAAGTTTTTAAGCGCAAAAAGTGGAAATACTTGATCTTAGATGAAGCCCATCTCATAAAAAACTGGAAGTCACAAAGGTGGCAGACACTCTTGAATTTCAATTCAAAACGACGTATTCTCTTGACTGGTACACCACTGCAGAATGATCTCATGGAGCTGTGGTCTCTAATGCATTTCTTGATGCCCCATGTTTTCCAGTCTCATCAAGAGTTTAAGGATTGGTTTAGTAATCCTATATCAGGGATGGTAGAGGGAGAGGAAAAAGTTAATAAGGAGGTTGTTGATCGGCTGCATAATGTTCTGCGTCCATTCTTACTCCGCCGGTTAAAACGAGACGTGGAAAAGCAACTTCCAATGAAACATGAGCATGTCATATACTGCAGACTGTCAAAGAGACAGCGTAATTTGTATGAAGACTTCATTGCTAGCTCAGAGACCCAGGCCACTCTTGCAAGTGCCAACTTTTTTGGGATGATTAGTATCATCATGCAACTTCGTAAGGTTTGCAATCATCCTGACCTTTTTGAGGGTCGTCCTATTGTCAGCTCTTTTGATATGTCGGGTATTGATATTCAATTAAGTTCTTCTGTTTGCTCCATGCTTTTGCCTAGTCCCTTTTCAACAGTGGACCTAAGAGGTTTAGGCCTTTTATTTACTCATCTTGACTATAGCATGACTTCTTGGGAAAGTGATGAAGTGCAAGCTATTGAGACCCCTGCAAGTATGGTCATGGACCGCACTGGTACAGATGACCTAGAAGTAATTAAGCCTGGGCTGAAATGTCGAAAAAAAGCTGCAAGGAACAAACATTTTTGA 2703 0.4058 MASKGPRSKIDHESRAKRQKALEAPREPRRPKTHWDHVLEEMVWLSKDFESERKWKLAQAKKVALRASKGMLDQATRDEKKMKEEESRLRKVALNISKDVKKFWTKIEKLVLYKHQMELDEKKKKELDKQLEFLLGQTERYSSMLAENLVDAHKPIERNSAEHQISTQYKDVNVDVVHEPKEANVENQLDAPDDDEEYDVQSDDESEDDEETLEEDEALITKEERQEELAALHDEINLPIEELLRRYADGKGESASKESSSEHDEDGGKIVRTGNENGDGILYANEICTSDLSMVPGRRCGESNGDVATALNNISQDENHQSGDLKEVPSEVANEHIAYDFTDEEDDDFLLGTEDKLHFNDQDDETTLSEEEKLEKVDAIDPKDEIALLQKESDMPVEELLARYKKDLSDDEGEDDSDYASALSDEHLDSPVYEDAGQKDPAVPMDEDIKSEHHAAVESQVEEQWEPPQETTEKRESEHIIADAAAAARSAQPTGNTFSTTKVRTKFPFLLKYSLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIALLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWSPAFKILTYFGSAKERKHKRQGWLKPNSFHVCITTYRLVIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMPHVFQSHQEFKDWFSNPISGMVEGEEKVNKEVVDRLHNVLRPFLLRRLKRDVEKQLPMKHEHVIYCRLSKRQRNLYEDFIASSETQATLASANFFGMISIIMQLRKVCNHPDLFEGRPIVSSFDMSGIDIQLSSSVCSMLLPSPFSTVDLRGLGLLFTHLDYSMTSWESDEVQAIETPASMVMDRTGTDDLEVIKPGLKCRKKAARNKHF* 901
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g2224 900 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 488 737 IPR027417 -
Dod06g2224 900 MobiDBLite consensus disorder prediction 189 217 - -
Dod06g2224 900 Coils Coil 72 92 - -
Dod06g2224 900 MobiDBLite consensus disorder prediction 160 233 - -
Dod06g2224 900 MobiDBLite consensus disorder prediction 1 33 - -
Dod06g2224 900 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 739 804 IPR027417 -
Dod06g2224 900 ProSiteProfiles HSA domain profile. 22 94 IPR014012 -
Dod06g2224 900 MobiDBLite consensus disorder prediction 249 279 - -
Dod06g2224 900 PANTHER HELICASE SRCAP-RELATED 3 887 - -
Dod06g2224 900 MobiDBLite consensus disorder prediction 453 477 - -
Dod06g2224 900 Pfam HSA domain 27 93 IPR014012 -
Dod06g2224 900 SMART bromneu2 23 94 IPR014012 -
Dod06g2224 900 CDD DEXQc_SRCAP 515 737 - -
Dod06g2224 900 MobiDBLite consensus disorder prediction 218 233 - -
Dod06g2224 900 Coils Coil 206 226 - -
Dod06g2224 900 SMART ultradead3 511 704 IPR014001 -
Dod06g2224 900 Gene3D - 761 837 - -
Dod06g2224 900 Pfam SNF2-related domain 532 804 IPR000330 GO:0005524|GO:0140658
Dod06g2224 900 MobiDBLite consensus disorder prediction 249 272 - -
Dod06g2224 900 MobiDBLite consensus disorder prediction 355 379 - -
Dod06g2224 900 PANTHER HELICASE SRCAP 3 887 - -
Dod06g2224 900 MobiDBLite consensus disorder prediction 425 444 - -
Dod06g2224 900 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 527 692 IPR014001 -
Dod06g2224 900 MobiDBLite consensus disorder prediction 174 188 - -
Dod06g2224 900 Gene3D - 483 760 IPR038718 -
Dod06g2224 900 Coils Coil 117 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g2224 Dod-Chr6 47854637 47874304 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g2224 535 807 RAD5 or RAD16-like Gene Family AT5G43530 30.745 7.70e-30 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Dod06g2224 SNF2_N 1.3e-70 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g2224 - - aprc:113871102 1409.05