Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g2223 ATGACTAAGATGCTTGACATACTAGAGGCTTTCATTAATTTGTATGGTTACACTTACATGCGGTTAGATGGATCAACTCAACCAGAGGAGAGGCAGACCTTAATGCAGCGTTTCAACACAAACCCCAAATATTTTCTTTTCATCTTGTCAACCCGTAGCGGGGGTGTTGGTATCAACCTAGTTGGAGCTGACACCGTTATTTTTTATGATAGTGACTGGAATCCTGCTATGGATCAACAGGCTCAAGATCGATGCCACAGAATTGGTCAAACACGTGAAGTTCATATCTACAGATTGATTAGTGAAAGCACCATTGAGGAAAATATTTTGAAGAAAGCAAAACAGAAGCGTGCACTTGATGATCTTGTTATCCAAAGTGGGGGTTATAATACTGAGTTCTTCAAGAAGCTTGATCCTATGGAACTATTTTCAGGTCATAGAACACTTCCAATAAAAAATATACAGGAGAAAAACCAGAACAATGGGGAAGTGTCTGTAACTAATGCAGATGTAGAGGCTGCATTAAAATGTGTAGAAGATGAAGCAGATTATATGGCATTGAAGAAAGTTGAAGAGGAAGATGCTGTGGACAACCAGGAGTTTACGGAAGAAGCTATCGGGAGACTTGAAGAGGATGAGTATGGAAATGAGGATGATATGAAGGATGATGAGCCTGTAGAATTTGGTGAATCTCTGTCCAATTTAGGTAAAGAGAACGTGCCAATGTTAAATGGAAGTGATCCTGGGGAAGATAGACTGCCCTGTGTTGTTGTCAAAGAAGATGATGCTGACATGCTGGCTGATGTAAAACAGATGGCTGCAGCAGCAGCTGCAGCTGGACAAGCTATATCTGCCTTTGAGAATAAGCTACGTCCTATTGATCGCTATGCCATTCGTTTTCTGGAGCTGTGGGACCCAATTATAGATAAAACAGCCTTGGAATCTGAAGTCAGGATTGAGGACACAGAATGGGAGTTGGATCGCATTGAAAGGTATAAGGAGGAAATGGAAGCTGAAATTGATGAAGATGAGGAACCTCTTGTATATGAAAGATGGGATGCTGATTTTGCAACTGAGGCATATCGACAGCAAGTAGAGGCCTTGGCTCAACATCAGTTAATGGAGGAACTAGAATATGAGGCTAAACAGAAAGCAGAAGCTGAGGAAGAAAATTGTGATTCTAAAAAGACCCAAATGCCAAGTGATTCGAAGCCCAGGTCAAAAAAGAAACCTAAGAAAGCTAAGTTTAAATCTCTGAAGAAAGGATCATTAACCTCTGGCTCTAGACCTGTGAAAGAAGAGCCACAAGCAGAGCCGATGACTATGGATGGTGATTTTATCAGTAGTCTTGCTTTTGTGTCTCCAAATTCGGCTATGCAGAGAAAACGGAAGAAATCTAAATTAACAACTGATGGTGAAGAAGAAAAGCGATTGAAGAAGTCCAGAAAATTCAAGAGGGATCCTCCTGATGTTTGTTCTTCAGATTTAGATTCCAACTTAATAGTTCTGCTGGATGAACATACAGAAACAAGGCCATGTGAAAGTCTGGTTGACTATGAACAGAAAACTGCAAGCAAGAGTAAGATGGGAGGAAAAATATCCATCACTCCAATGCCAGTGAAACGGATCTTGATGATAAAACCAGAAAAATTGAAAAAGGGAAATCTTTGGTCGAAGGATTGCATTCCACCAGCAGATTTTTGGTTGCCTCAGGAAGATGCAATATTATGTGCTGTTGTTCATGAGTATGGATCTAACTGGAGTTTGGTTAGTGAAACACTTTATGGCATGACTGCTGGTGGGGCATACCGGGGGAGATATCGTCATCCTGTCCATTGCTGTGAGAGGTTTAGAGAACTATTCCAGAAATCTGTCTTATTCTCATTAGAGGCTGCAAATCATGAGAAGATCAACAGTACTGGTTCTGGAAAGGCTCTTCTTAAAGTCACGGAGGATAACATTCGGATGTTGTTAGATGTTGCTTCTGAGCAGCCAAATAGAGAGCTACTGCTGCAGAAGCATTTTTATGCACTGCTTTCATCTGTCTGGAAGGTGGCATCATATGTTGAACGCAGGCAAAATCCAGCTCCTACCTCTAATGGTCTCTATTTTGATCAGAGTTTCTTTACTTCCGTTGGCCAGCATTCACAGAATTCCTTGAAGAAACCCTCTGAAAGGTTGACATTCAGTGATATGGCCCAAAGCAAGAAGTTATTAGCAGCTGCACTTGATGATGCCAGAAGTAGGCAAGAGAATGACCAAATCTTCATTTCTAATCACGGTGAAGACATGCCAGTTAGTAAAGATCAGTTGGATATAACACTGGAGTTCCCAAAAGAGGAGAGTGATGCCTTATCTTCCTTTCCATCTGTTATAAATTTATCAATCCAGGGGATAGAACCCCTGGCATCTTTAACTAAGCAAACAGGAGATGATCACCTTAAAGTTTGTTCGTCTGTTGCTGAGAATCGTTTCAGGGAAGCAGCAAGAGCTTGTGAGGAAGACAGTTCTGGATGGGCTTCATCAGCATTCCCGATGAATGATACAAGGTCTCGACCTGGGTCCAGGATGCAATCATTGGGAAAGCAAAGGTCTTCCATCTCCGACTCTTGTAAGCCATCCAAGTCGAAGTCTAAAAGAGCTTCAGTTGATCCTGGGGAAATGCATCCCCAAGAGACTGAACAGTTATTCCATTCTATGCCAACACTTAAGGATCTGAGATTTGATCTCACTGAATTCACTAAGGATGGCATTGGAATTGATGATATGCATAGCAATCTCCTGTTTGGCCCTAATGTCAGAAATTCATTTGATATGGAGAGTTTTGAAGTGGTTCCGCATGATTATGTAGATGGTTTAATCTCGGGCCTTGATGATTGCACAGCATTTCCTGAATATAATGACATTCGGTAG 2913 0.4143 MTKMLDILEAFINLYGYTYMRLDGSTQPEERQTLMQRFNTNPKYFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKAKQKRALDDLVIQSGGYNTEFFKKLDPMELFSGHRTLPIKNIQEKNQNNGEVSVTNADVEAALKCVEDEADYMALKKVEEEDAVDNQEFTEEAIGRLEEDEYGNEDDMKDDEPVEFGESLSNLGKENVPMLNGSDPGEDRLPCVVVKEDDADMLADVKQMAAAAAAAGQAISAFENKLRPIDRYAIRFLELWDPIIDKTALESEVRIEDTEWELDRIERYKEEMEAEIDEDEEPLVYERWDADFATEAYRQQVEALAQHQLMEELEYEAKQKAEAEEENCDSKKTQMPSDSKPRSKKKPKKAKFKSLKKGSLTSGSRPVKEEPQAEPMTMDGDFISSLAFVSPNSAMQRKRKKSKLTTDGEEEKRLKKSRKFKRDPPDVCSSDLDSNLIVLLDEHTETRPCESLVDYEQKTASKSKMGGKISITPMPVKRILMIKPEKLKKGNLWSKDCIPPADFWLPQEDAILCAVVHEYGSNWSLVSETLYGMTAGGAYRGRYRHPVHCCERFRELFQKSVLFSLEAANHEKINSTGSGKALLKVTEDNIRMLLDVASEQPNRELLLQKHFYALLSSVWKVASYVERRQNPAPTSNGLYFDQSFFTSVGQHSQNSLKKPSERLTFSDMAQSKKLLAAALDDARSRQENDQIFISNHGEDMPVSKDQLDITLEFPKEESDALSSFPSVINLSIQGIEPLASLTKQTGDDHLKVCSSVAENRFREAARACEEDSSGWASSAFPMNDTRSRPGSRMQSLGKQRSSISDSCKPSKSKSKRASVDPGEMHPQETEQLFHSMPTLKDLRFDLTEFTKDGIGIDDMHSNLLFGPNVRNSFDMESFEVVPHDYVDGLISGLDDCTAFPEYNDIR* 971
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g2223 970 CDD SF2_C_SNF 1 100 - -
Dod06g2223 970 Pfam Helicase conserved C-terminal domain 5 89 IPR001650 -
Dod06g2223 970 PANTHER HELICASE SRCAP 1 847 - -
Dod06g2223 970 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1 130 IPR001650 -
Dod06g2223 970 MobiDBLite consensus disorder prediction 381 490 - -
Dod06g2223 970 MobiDBLite consensus disorder prediction 873 887 - -
Dod06g2223 970 PANTHER HELICASE SRCAP-RELATED 1 847 - -
Dod06g2223 970 SUPERFAMILY Homeodomain-like 566 624 IPR009057 -
Dod06g2223 970 Gene3D - 565 625 - -
Dod06g2223 970 MobiDBLite consensus disorder prediction 836 894 - -
Dod06g2223 970 Gene3D - 1 194 IPR027417 -
Dod06g2223 970 ProSiteProfiles Myb-like domain profile. 568 621 IPR001005 -
Dod06g2223 970 Coils Coil 319 339 - -
Dod06g2223 970 MobiDBLite consensus disorder prediction 196 248 - -
Dod06g2223 970 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 150 IPR027417 -
Dod06g2223 970 Coils Coil 370 390 - -
Dod06g2223 970 MobiDBLite consensus disorder prediction 381 405 - -
Dod06g2223 970 MobiDBLite consensus disorder prediction 464 490 - -
Dod06g2223 970 MobiDBLite consensus disorder prediction 840 872 - -
Dod06g2223 970 SMART helicmild6 6 89 IPR001650 -
Dod06g2223 970 MobiDBLite consensus disorder prediction 210 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g2223 Dod-Chr6 47849303 47854097 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g2223 2 119 RAD5 or RAD16-like Gene Family AT1G11100 42.373 4.45e-22 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g2223 - - aprc:113871102 1480.31