Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g2208 ATGTCCTCGCAGGACCAAGCACTAGCCTCGCTTCTCTCCCGGCTAGCCCTATCCTTCGACGGCGCCGTTTCGGGCTTAGCCTTGGCCTACGTCGCCGTCCGCTGCCTCCTCAAGTTCAACGCCTCTTCCGCCGCCCTCCGCAAGCTCCGCCGCGCTCCCTCCGCCTCCGTCGCCGATCTCCGCTCTCTCCTCACCGACAACTCCACCGACGCTGACGGAGGTTCTGACGATGGCAAAATCGTAATTGTCCGCGGCACTGTCGACACCAAGTCCGCCGTCGACGGCGGCTGGAAAACATTGAGGCCTGGCGTCTTGGTGTCTCGCGAGTCTGGCGACAAAGCCGTCGTTCTTCAAAGAACTCAAAGGTGTATATACAACGAGTGGAAGGGCTTATTTGGATGGACTTCTGATTTTCGAGCTATATTTGCTAGATCTTGGAGACAACAAGAGTCTACATCCCTAAGAAAGGTGCCTTTTGTTCTCATTGATGTTGTACGGCGGCCAAATACTGAATATGTTGTTGTCAGCTTGGAAGGATCAAGACATCCGTTACCTCTGACAACAGTTTATCATAAATTGCAACCCATACATGCTTCTCCTTACACTTTCTTGCAAGCCCTTTTCGGGCATGAATATCCGGTTGGATTACTAGATGAAGAGAAAATTCTTCCTGTGGGAAAGGATATAACTGCAGTTGGCCTTTGCAGTTTAAAAAATGGAATTGCTGAAATTAAGTCATGTAAAGACCTACCATATTTTCTTTCGGACTTGAGTAAAGATCAGATGATTGTAGATGTTGCCTTCAAAACAAAAATACTGTTTTGGGGTGGTATTGTTCTTGGTTCACTGTCAATTGGGATTCTTGGATTCTCAGTTGTGAGGAACTGGAATAAGTGGAAGCAGTGGAAACAACAGCGGCAGCACCAGCAGCAAAGGCAAGCGATCAGTGATGAAGTTGATCATCAAGTGGACAATGAGAATGAAGATGTTCCTGACGGACAATTATGTGTTATATGCCTAATGAGGAGAAGGCGCTCTGTTTTCATCCCTTGTGGGCATCTTGTGTGTTGCCGGGGGTGTGCCATATCTGTTGAACGTGAAGAGGCACCCAAGTGTCCAGTTTGTCGTCAGGAGATTCGGGATTCAGTGCGGATTTTTGAATCTTGA 1167 0.485 MSSQDQALASLLSRLALSFDGAVSGLALAYVAVRCLLKFNASSAALRKLRRAPSASVADLRSLLTDNSTDADGGSDDGKIVIVRGTVDTKSAVDGGWKTLRPGVLVSRESGDKAVVLQRTQRCIYNEWKGLFGWTSDFRAIFARSWRQQESTSLRKVPFVLIDVVRRPNTEYVVVSLEGSRHPLPLTTVYHKLQPIHASPYTFLQALFGHEYPVGLLDEEKILPVGKDITAVGLCSLKNGIAEIKSCKDLPYFLSDLSKDQMIVDVAFKTKILFWGGIVLGSLSIGILGFSVVRNWNKWKQWKQQRQHQQQRQAISDEVDHQVDNENEDVPDGQLCVICLMRRRRSVFIPCGHLVCCRGCAISVEREEAPKCPVCRQEIRDSVRIFES* 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g2208 388 Pfam Zinc finger, C3HC4 type (RING finger) 334 381 - -
Dod06g2208 388 Coils Coil 376 388 - -
Dod06g2208 388 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SPL2 1 388 IPR044247 GO:0004842
Dod06g2208 388 SMART ring_2 336 375 IPR001841 -
Dod06g2208 388 ProSiteProfiles Zinc finger RING-type profile. 336 376 IPR001841 -
Dod06g2208 388 SUPERFAMILY RING/U-box 323 381 - -
Dod06g2208 388 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 319 388 IPR013083 -
Dod06g2208 388 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SPL2 1 388 - -
Dod06g2208 388 Pfam E3 Ubiquitin ligase 141 288 IPR022170 GO:0004842|GO:0006996|GO:0016567
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g2208 333 385 C3H Transcription Factor Family AT3G06140 39.623 5.81e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g2208 K15688 - gmx:100800058 603.208
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod06g2208 06 47346333 47363927 Dod06g2208 06 47346333 47363927 ECH